Aliases for TEX36-AS1 Gene

Subcategory (RNA class) for TEX36-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for TEX36-AS1 Gene

  • TEX36 Antisense RNA 1 2 3 5
  • TEX36-AS1 2 170
  • NONHSAG007129 94
  • HSALNG0081415 169

External Ids for TEX36-AS1 Gene

Previous GeneCards Identifiers for TEX36-AS1 Gene

  • GC10P127264

Summaries for TEX36-AS1 Gene

GeneCards Summary for TEX36-AS1 Gene

TEX36-AS1 (TEX36 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TEX36-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TEX36-AS1 Gene

Genomics for TEX36-AS1 Gene

GeneHancer (GH) Regulatory Elements for TEX36-AS1 Gene

Promoters and enhancers for TEX36-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J125053 Enhancer 1.1 ENCODE dbSUPER 14.6 -514.1 -514113 12.5 E2F8 ZNF24 ZBTB40 CTCF CTBP1 ZNF217 ETV6 RELA CEBPB RAD21 NPM1P31 TEX36-AS1 FANK1-AS1 MIR4296 lnc-EEF1AKMT2-2 lnc-CTBP2-3 CTBP2
GH10J125633 Enhancer 1.1 Ensembl ENCODE 11.4 +59.6 59592 1.6 TCF7L2 CTBP1 ZNF362 ZNF280D BCL6B NCOA3 SP7 ZSCAN21 PRDM1 GLIS2 piR-31109-001 TEX36-AS1 piR-55036-016 TEX36
GH10J125624 Enhancer 0.8 Ensembl ENCODE 11 +50.6 50570 0.3 GATA3 TCF7L2 ZNF217 NFIB NCOA3 CREB1 RFX1 CTBP1 BMI1 ZKSCAN1 TEX36-AS1 piR-31109-001 lnc-EDRF1-4 TEX36
GH10J125629 Enhancer 0.5 ENCODE 11.4 +55.6 55586 0.1 CTCF ZNF362 RAD21 ZNF384 REST SMC3 TEAD3 MAFF TEX36-AS1 piR-31109-001 lnc-EDRF1-4 TEX36
GH10J125549 Enhancer 0.4 Ensembl 12.1 -24.4 -24371 0.8 MYC MAX FOXA2 JUN TEX36-AS1 HSALNG0081412 RF00994-156
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TEX36-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TEX36-AS1 Gene

Genomic Locations for TEX36-AS1 Gene
chr10:125,574,371-125,585,160
(GRCh38/hg38)
Size:
10,790 bases
Orientation:
Plus strand
chr10:127,262,940-127,267,014
(GRCh37/hg19)
Size:
4,075 bases
Orientation:
Plus strand

Genomic View for TEX36-AS1 Gene

Genes around TEX36-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX36-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX36-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX36-AS1 Gene

Proteins for TEX36-AS1 Gene

Post-translational modifications for TEX36-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TEX36-AS1 Gene

Domains & Families for TEX36-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TEX36-AS1 Gene

Function for TEX36-AS1 Gene

Phenotypes From GWAS Catalog for TEX36-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX36-AS1 Gene

Localization for TEX36-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TEX36-AS1 Gene

Pathways & Interactions for TEX36-AS1 Gene

PathCards logo

SuperPathways for TEX36-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TEX36-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX36-AS1 Gene

Drugs & Compounds for TEX36-AS1 Gene

No Compound Related Data Available

Transcripts for TEX36-AS1 Gene

mRNA/cDNA for TEX36-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) NONCODE transcripts :
(8) RNACentral transcripts :
(4) LncBook transcripts :
(6) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TEX36-AS1 Gene

No ASD Table

Relevant External Links for TEX36-AS1 Gene

GeneLoc Exon Structure for
TEX36-AS1
ECgene alternative splicing isoforms for
TEX36-AS1

Expression for TEX36-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX36-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TEX36-AS1 Gene

This gene is overexpressed in Testis (x52.9).
genes like me logo Genes that share expression patterns with TEX36-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX36-AS1 Gene

Orthologs for TEX36-AS1 Gene

Evolution for TEX36-AS1 Gene

ENSEMBL:
Gene Tree for TEX36-AS1 (if available)
TreeFam:
Gene Tree for TEX36-AS1 (if available)

No data available for Orthologs for TEX36-AS1 Gene

Paralogs for TEX36-AS1 Gene

No data available for Paralogs for TEX36-AS1 Gene

Variants for TEX36-AS1 Gene

Sequence variations from dbSNP and Humsavar for TEX36-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000019328 -- 125,577,995(+) G/A intron_variant
rs1000159081 -- 125,574,397(+) C/T non_coding_transcript_variant
rs1000176044 -- 125,575,901(+) T/C non_coding_transcript_variant
rs1000546497 -- 125,574,427(+) G/A non_coding_transcript_variant
rs1000611453 -- 125,575,624(+) G/A intron_variant

Additional Variant Information for TEX36-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX36-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TEX36-AS1 Gene

Disorders for TEX36-AS1 Gene

Additional Disease Information for TEX36-AS1

No disorders were found for TEX36-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX36-AS1 Gene

Publications for TEX36-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for TEX36-AS1 Gene

Sources for TEX36-AS1 Gene