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Aliases for TEKT1 Gene

Aliases for TEKT1 Gene

  • Tektin 1 2 3 5
  • Tektin-1 3

External Ids for TEKT1 Gene

Previous GeneCards Identifiers for TEKT1 Gene

  • GC17M007092
  • GC17M007432
  • GC17M006645
  • GC17M006901
  • GC17M006644
  • GC17M006692

Summaries for TEKT1 Gene

Entrez Gene Summary for TEKT1 Gene

  • This gene product belongs to the tektin family of proteins. Tektins comprise a family of filament-forming proteins that are coassembled with tubulins to form ciliary and flagellar microtubules. This gene is predominantly expressed in the testis and in mouse, tektin 1 mRNA was localized to the spermatocytes and round spermatids in the seminiferous tubules, indicating that it may play a role in spermatogenesis. [provided by RefSeq, Jul 2008]

GeneCards Summary for TEKT1 Gene

TEKT1 (Tektin 1) is a Protein Coding gene. An important paralog of this gene is TEKT4.

UniProtKB/Swiss-Prot for TEKT1 Gene

  • Structural component of ciliary and flagellar microtubules. Forms filamentous polymers in the walls of ciliary and flagellar microtubules.

Gene Wiki entry for TEKT1 Gene

Additional gene information for TEKT1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEKT1 Gene

Genomics for TEKT1 Gene

GeneHancer (GH) Regulatory Elements for TEKT1 Gene

Promoters and enhancers for TEKT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I006831 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 550.8 -0.1 -104 0.8 MXI1 FOXA2 SAP130 ZNF449 MAX ARID4B SIN3A BMI1 THRB RAD21 TEKT1 FBXO39 ALOX12P2
GH17I006853 Promoter/Enhancer 1.6 Ensembl ENCODE 11.5 -22.9 -22900 2.7 ELF3 ARID4B SIN3A DMAP1 ZBTB7B THRB ZBTB40 RAD21 YY1 ETS1 ALOX12P2 TEKT1 FBXO39 BCL6B SLC13A5 MIR195 GC17M006868
GH17I006867 Enhancer 0.9 FANTOM5 ENCODE 11.4 -36.8 -36826 2.5 PKNOX1 JUN CEBPG BRCA1 CTBP1 GATA3 RCOR1 FOSL2 FOS KLF8 TEKT1 ALOX12P2 GC17M006868 GC17P006901
GH17I006668 Enhancer 0.7 ENCODE 10.6 +161.4 161432 3.2 ELF3 SOX13 SAP130 NFIB KLF17 THRB ZNF48 RARA SOX5 NFIA GC17P006673 PIR54331 SLC13A5 KIAA0753 TXNDC17 FBXO39 TEKT1 BCL6B ENSG00000261996 CTDNEP1
GH17I006800 Enhancer 0.4 ENCODE 17 +31.1 31144 0.2 CTCF MAX CREB1 TEKT1 FBXO39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TEKT1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TEKT1 gene promoter:

Genomic Locations for TEKT1 Gene

Genomic Locations for TEKT1 Gene
chr17:6,789,133-6,831,761
(GRCh38/hg38)
Size:
42,629 bases
Orientation:
Minus strand
chr17:6,692,452-6,735,080
(GRCh37/hg19)

Genomic View for TEKT1 Gene

Genes around TEKT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEKT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEKT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEKT1 Gene

Proteins for TEKT1 Gene

  • Protein details for TEKT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969V4-TEKT1_HUMAN
    Recommended name:
    Tektin-1
    Protein Accession:
    Q969V4
    Secondary Accessions:
    • D3DTM7

    Protein attributes for TEKT1 Gene

    Size:
    418 amino acids
    Molecular mass:
    48283 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEKT1 Gene

Post-translational modifications for TEKT1 Gene

No Post-translational modifications

Other Protein References for TEKT1 Gene

No data available for DME Specific Peptides for TEKT1 Gene

Domains & Families for TEKT1 Gene

Gene Families for TEKT1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TEKT1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TEKT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q969V4

UniProtKB/Swiss-Prot:

TEKT1_HUMAN :
  • Belongs to the tektin family.
Family:
  • Belongs to the tektin family.
genes like me logo Genes that share domains with TEKT1: view

Function for TEKT1 Gene

Molecular function for TEKT1 Gene

UniProtKB/Swiss-Prot Function:
Structural component of ciliary and flagellar microtubules. Forms filamentous polymers in the walls of ciliary and flagellar microtubules.

Phenotypes From GWAS Catalog for TEKT1 Gene

Gene Ontology (GO) - Molecular Function for TEKT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TEKT1: view
genes like me logo Genes that share phenotypes with TEKT1: view

Animal Model Products

miRNA for TEKT1 Gene

miRTarBase miRNAs that target TEKT1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEKT1 Gene

Localization for TEKT1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEKT1 Gene

Cytoplasm, cytoskeleton, cilium axoneme. Cytoplasm, cytoskeleton, flagellum axoneme.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TEKT1 gene
Compartment Confidence
nucleus 5
cytoskeleton 4
cytosol 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TEKT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA,IDA 21630459
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005874 microtubule IEA --
GO:0005929 cilium IEA --
genes like me logo Genes that share ontologies with TEKT1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for TEKT1 Gene

Pathways & Interactions for TEKT1 Gene

SuperPathways for TEKT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TEKT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030317 flagellated sperm motility IBA --
GO:0060271 cilium assembly IBA --
GO:0060294 cilium movement involved in cell motility IBA --
genes like me logo Genes that share ontologies with TEKT1: view

No data available for Pathways by source and SIGNOR curated interactions for TEKT1 Gene

Drugs & Compounds for TEKT1 Gene

No Compound Related Data Available

Transcripts for TEKT1 Gene

Unigene Clusters for TEKT1 Gene

Tektin 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEKT1 Gene

No ASD Table

Relevant External Links for TEKT1 Gene

GeneLoc Exon Structure for
TEKT1
ECgene alternative splicing isoforms for
TEKT1

Expression for TEKT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEKT1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEKT1 Gene

This gene is overexpressed in Testis (x16.4), Fallopian Tube (x7.4), Brain - Hypothalamus (x4.8), and Cervix - Endocervix (x4.7).

Protein differential expression in normal tissues from HIPED for TEKT1 Gene

This gene is overexpressed in Esophagus (47.0), Heart (8.3), and Tlymphocyte (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TEKT1 Gene



Protein tissue co-expression partners for TEKT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TEKT1 Gene:

TEKT1

SOURCE GeneReport for Unigene cluster for TEKT1 Gene:

Hs.462108

mRNA Expression by UniProt/SwissProt for TEKT1 Gene:

Q969V4-TEKT1_HUMAN
Tissue specificity: Predominantly expressed in testis.

Evidence on tissue expression from TISSUES for TEKT1 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with TEKT1: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for TEKT1 Gene

Orthologs for TEKT1 Gene

This gene was present in the common ancestor of animals.

Orthologs for TEKT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEKT1 34 33
  • 99.2 (n)
OneToOne
cow
(Bos Taurus)
Mammalia TEKT1 34 33
  • 87.08 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tekt1 33
  • 81.82 (n)
mouse
(Mus musculus)
Mammalia Tekt1 33 16 34
  • 81.74 (n)
dog
(Canis familiaris)
Mammalia TEKT1 34 33
  • 81.64 (n)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TEKT1 34
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves TEKT1 34 33
  • 66.42 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TEKT1 34
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tekt1 33
  • 65.5 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.30012 33
zebrafish
(Danio rerio)
Actinopterygii tekt1 34 33
  • 57.74 (n)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Tektin-C 33 35
  • 46.8 (n)
Tektin-A 35
  • 30 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007334 33
  • 46.8 (n)
worm
(Caenorhabditis elegans)
Secernentea R02E12.4 33
  • 41.67 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9917 34
  • 56 (a)
OneToOne
Species where no ortholog for TEKT1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TEKT1 Gene

ENSEMBL:
Gene Tree for TEKT1 (if available)
TreeFam:
Gene Tree for TEKT1 (if available)

Paralogs for TEKT1 Gene

Paralogs for TEKT1 Gene

(5) SIMAP similar genes for TEKT1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with TEKT1: view

Variants for TEKT1 Gene

Sequence variations from dbSNP and Humsavar for TEKT1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000010783 -- 6,826,105(-) T/G intron_variant
rs1000047301 -- 6,829,372(-) A/G intron_variant
rs1000069478 -- 6,811,690(-) G/C intron_variant
rs1000145490 -- 6,828,903(-) G/C intron_variant
rs1000155024 -- 6,830,058(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TEKT1 Gene

Variant ID Type Subtype PubMed ID
nsv1059072 CNV loss 25217958
esv3639846 CNV loss 21293372
esv3572387 CNV gain 25503493
esv2761942 CNV gain 21179565
esv2422288 CNV deletion 17116639

Variation tolerance for TEKT1 Gene

Residual Variation Intolerance Score: 95.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.48; 88.73% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TEKT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEKT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEKT1 Gene

Disorders for TEKT1 Gene

Additional Disease Information for TEKT1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TEKT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEKT1 Gene

Publications for TEKT1 Gene

  1. Cloning and characterization of a novel human TEKTIN1 gene. (PMID: 11606253) Xu M … Mao Y (The international journal of biochemistry & cell biology 2001) 2 3 4 58
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
  3. Follow-up of potential novel Graves' disease susceptibility loci, identified in the UK WTCCC genome-wide nonsynonymous SNP study. (PMID: 20442750) Newby PR … Gough SC (European journal of human genetics : EJHG 2010) 3 44 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. (PMID: 26871637) Yang X … Vidal M (Cell 2016) 3 58

Products for TEKT1 Gene

Sources for TEKT1 Gene

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