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Aliases for TDRG1 Gene

Aliases for TDRG1 Gene

  • Testis Development Related 1 2 3
  • Testis Development Related 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 532 2 3
  • Testis Development Related Protein 1 3
  • Testis Development-Related Protein 1 3
  • LincRNA-NR_024015 3
  • LINC00532 3

External Ids for TDRG1 Gene

Previous GeneCards Identifiers for TDRG1 Gene

  • GC06P040456
  • GC06P040303
  • GC06P040862
  • GC06P040865

Summaries for TDRG1 Gene

GeneCards Summary for TDRG1 Gene

TDRG1 (Testis Development Related 1) is a Protein Coding gene.

Additional gene information for TDRG1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TDRG1 Gene

Genomics for TDRG1 Gene

GeneHancer (GH) Regulatory Elements for TDRG1 Gene

Promoters and enhancers for TDRG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I040396 Enhancer 0.8 ENCODE 12.6 +61.7 61733 0.9 CLOCK NFIB ZSCAN4 NEUROD1 SIN3A BMI1 ZBTB40 ZNF207 RCOR1 HCFC1 TDRG1 RNU6-250P GC06P042387 PIRC28 LRFN2
GH06I040398 Enhancer 0.6 ENCODE 13.2 +64.1 64103 0.2 AFF1 HCFC1 SUZ12 SIN3A ETS1 ZNF217 ATF4 ZNF143 THAP11 TDRG1 RNU6-250P GC06P042387 LRFN2
GH06I040419 Enhancer 0.4 ENCODE 8.4 +84.6 84591 0.7 HLF REST TDRG1 RNU6-250P ENSG00000236075 LRFN2
GH06I039890 Enhancer 0.6 dbSUPER 4.6 -442.8 -442805 4.1 CTCF ZNF654 TAL1 CBFA2T3 REST RAD21 NCOR1 HNF4A ZNF444 PRDM4 LOC100505635 MOCS1 TDRG1 ENSG00000281969 DAAM2
GH06I040388 Enhancer 0.2 ENCODE 12.9 +54.4 54424 0.8 TDRG1 GC06P042387 RNU6-250P PIRC28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TDRG1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TDRG1 gene promoter:

Genomic Locations for TDRG1 Gene

Genomic Locations for TDRG1 Gene
chr6:40,334,954-40,379,892
(GRCh38/hg38)
Size:
44,939 bases
Orientation:
Plus strand
chr6:40,302,693-40,347,631
(GRCh37/hg19)

Genomic View for TDRG1 Gene

Genes around TDRG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TDRG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TDRG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TDRG1 Gene

Proteins for TDRG1 Gene

  • Protein details for TDRG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3Y452-TDRG1_HUMAN
    Recommended name:
    Testis development-related protein 1
    Protein Accession:
    Q3Y452

    Protein attributes for TDRG1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10472 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TDRG1 Gene

Post-translational modifications for TDRG1 Gene

No Post-translational modifications

Other Protein References for TDRG1 Gene

No data available for DME Specific Peptides for TDRG1 Gene

Domains & Families for TDRG1 Gene

Gene Families for TDRG1 Gene

Protein Domains for TDRG1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TDRG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TDRG1: view

No data available for UniProtKB/Swiss-Prot for TDRG1 Gene

Function for TDRG1 Gene

Phenotypes From GWAS Catalog for TDRG1 Gene

Phenotypes for TDRG1 Gene

GenomeRNAi human phenotypes for TDRG1:
genes like me logo Genes that share phenotypes with TDRG1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TDRG1 Gene

Localization for TDRG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TDRG1 Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for TDRG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TDRG1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for TDRG1 Gene

Pathways & Interactions for TDRG1 Gene

SuperPathways for TDRG1 Gene

No Data Available

Interacting Proteins for TDRG1 Gene

Gene Ontology (GO) - Biological Process for TDRG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organism development IEA --
genes like me logo Genes that share ontologies with TDRG1: view

No data available for Pathways by source and SIGNOR curated interactions for TDRG1 Gene

Drugs & Compounds for TDRG1 Gene

No Compound Related Data Available

Transcripts for TDRG1 Gene

mRNA/cDNA for TDRG1 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TDRG1 Gene

Testis development related 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TDRG1 Gene

No ASD Table

Relevant External Links for TDRG1 Gene

GeneLoc Exon Structure for
TDRG1
ECgene alternative splicing isoforms for
TDRG1

Expression for TDRG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TDRG1 Gene

mRNA differential expression in normal tissues according to GTEx for TDRG1 Gene

This gene is overexpressed in Testis (x45.5).

NURSA nuclear receptor signaling pathways regulating expression of TDRG1 Gene:

TDRG1

SOURCE GeneReport for Unigene cluster for TDRG1 Gene:

Hs.180197

mRNA Expression by UniProt/SwissProt for TDRG1 Gene:

Q3Y452-TDRG1_HUMAN
Tissue specificity: Expressed in the testis but not in any other non-reproductive tissues (at protein level). Mainly located in spermatogenic cells in seminiferous tubules of adult testis.
genes like me logo Genes that share expression patterns with TDRG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TDRG1 Gene

Orthologs for TDRG1 Gene

Evolution for TDRG1 Gene

ENSEMBL:
Gene Tree for TDRG1 (if available)
TreeFam:
Gene Tree for TDRG1 (if available)

No data available for Orthologs for TDRG1 Gene

Paralogs for TDRG1 Gene

No data available for Paralogs for TDRG1 Gene

Variants for TDRG1 Gene

Sequence variations from dbSNP and Humsavar for TDRG1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1001232168 -- 40,377,004(+) C/A upstream_transcript_variant
rs1001683674 -- 40,376,673(+) C/A upstream_transcript_variant
rs1001896246 -- 40,377,591(+) T/C upstream_transcript_variant
rs1001948590 -- 40,377,324(+) T/A upstream_transcript_variant
rs1002896093 -- 40,378,783(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TDRG1 Gene

Variant ID Type Subtype PubMed ID
esv2763989 CNV loss 21179565
nsv5273 CNV deletion 18451855

Additional Variant Information for TDRG1 Gene

Human Gene Mutation Database (HGMD)
TDRG1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TDRG1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TDRG1 Gene

Disorders for TDRG1 Gene

Additional Disease Information for TDRG1

No disorders were found for TDRG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TDRG1 Gene

Publications for TDRG1 Gene

  1. Characterization of a novel human testis-specific gene: testis developmental related gene 1 (TDRG1). (PMID: 22123530) Jiang X … Tang Y (The Tohoku journal of experimental medicine 2011) 2 3 4 58
  2. The has-miR-526b binding-site rs8506G>a polymorphism in the lincRNA-NR_024015 exon identified by GWASs predispose to non-cardia gastric cancer risk. (PMID: 24595048) Fan QH … Zhang LY (PloS one 2014) 2 3 58
  3. The role of the long non-coding RNA TDRG1 in epithelial ovarian carcinoma tumorigenesis and progression through miR-93/RhoC pathway. (PMID: 28984384) Chen S … Zhao Y (Molecular carcinogenesis 2018) 3 58
  4. A genetic polymorphism at miR-526b binding-site in the lincRNA-NR_024015 exon confers risk of esophageal squamous cell carcinoma in a population of North China. (PMID: 27583835) Han L … Guo W (Molecular carcinogenesis 2017) 3 58
  5. Potential lncRNA diagnostic biomarkers for early gastric cancer. (PMID: 29039538) Lu Q … Chen X (Molecular medicine reports 2017) 3 58

Products for TDRG1 Gene

Sources for TDRG1 Gene

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