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This gene encodes a member of a superfamily of divalent cation-dependent phosphodiesterases. The encoded protein associates with CD40, tumor necrosis factor (TNF) receptor-75 and TNF receptor associated factors (TRAFs), and inhibits nuclear factor-kappa-B activation. This protein has sequence and structural similarities with APE1 endonuclease, which is involved in both DNA repair and the activation of transcription factors. [provided by RefSeq, Jul 2008]
TDP2 (Tyrosyl-DNA Phosphodiesterase 2) is a Protein Coding gene. Diseases associated with TDP2 include Spinocerebellar Ataxia, Autosomal Recessive 23 and Ruijs-Aalfs Syndrome. Among its related pathways are DNA Double Strand Break Response and CD40/CD40L signaling. Gene Ontology (GO) annotations related to this gene include transcription corepressor activity and single-stranded DNA binding.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000287 | magnesium ion binding | TAS | 19794497 |
GO:0003697 | single-stranded DNA binding | IBA,IDA | 22822062 |
GO:0003714 | transcription corepressor activity | TAS | 10764746 |
GO:0004518 | nuclease activity | IEA | -- |
GO:0005515 | protein binding | IPI | 18039968 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IEA,IDA | 22908287 |
GO:0005654 | nucleoplasm | IDA | -- |
GO:0005730 | nucleolus | IEA | -- |
GO:0005737 | cytoplasm | IBA,IDA | 22908287 |
GO:0016235 | aggresome | IDA | -- |
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | DNA Double-Strand Break Repair |
.53
|
|
2 | DNA Double Strand Break Response | ||
3 | CD40/CD40L signaling |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006281 | DNA repair | IEA | -- |
GO:0006302 | double-strand break repair | IBA,IMP | 21030584 |
GO:0006974 | cellular response to DNA damage stimulus | IEA | -- |
GO:0007166 | cell surface receptor signaling pathway | TAS | 10764746 |
GO:0016032 | viral process | IEA | -- |
ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | · | 2c | · | 2d | · | 2e | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | · | 7d |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | - | - | |||||||||||||||||||||||||||
SP2: | - | - | - | ||||||||||||||||||||||||||||
SP3: | - | ||||||||||||||||||||||||||||||
SP4: | |||||||||||||||||||||||||||||||
SP5: | - |
This gene was present in the common ancestor of animals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | TDP2 30 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | TDP2 30 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | TDP2 30 31 |
|
OneToOne | |
Rat (Rattus norvegicus) |
Mammalia | Tdp2 30 |
|
||
Mouse (Mus musculus) |
Mammalia | Tdp2 30 17 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | TDP2 31 |
|
OneToOne | |
Chicken (Gallus gallus) |
Aves | TDP2 30 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | TDP2 31 |
|
OneToOne | |
Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | tdp2 30 |
|
||
Str.3755 30 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | Xl.8025 30 |
|
||
Zebrafish (Danio rerio) |
Actinopterygii | tdp2b 30 31 |
|
OneToMany | |
TDP2 (2 of 2) 31 |
|
OneToMany | |||
Rainbow Trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.7216 30 |
|
||
Worm (Caenorhabditis elegans) |
Secernentea | CELE_Y63D3A.4 30 |
|
||
Y63D3A.4 31 |
|
OneToOne | |||
Sea Squirt (Ciona savignyi) |
Ascidiacea | CSA.2731 31 |
|
OneToOne |
SNP ID | Clinical significance and condition | Chr 06 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
709650 | Likely Benign: not provided | 24,666,602(-) | T/C | MISSENSE_VARIANT | |
718735 | Benign: not provided | 24,650,958(-) | T/C | MISSENSE_VARIANT | |
720364 | Likely Benign: not provided | 24,653,142(-) | T/G | SYNONYMOUS_VARIANT | |
727113 | Likely Benign: not provided | 24,658,720(-) | T/C | MISSENSE_VARIANT | |
727156 | Likely Benign: not provided | 24,657,828(-) | A/G | SYNONYMOUS_VARIANT |
Disorder | Aliases | PubMed IDs |
---|---|---|
spinocerebellar ataxia, autosomal recessive 23 |
|
|
ruijs-aalfs syndrome |
|
|
spinocerebellar ataxia type 1 with axonal neuropathy |
|
|
paralytic poliomyelitis |
|
|
reading disorder |
|
|