TDGP1 Gene (Pseudogene)

Thymine-DNA Glycosylase Pseudogene 1

GC12P025803
GIFtS:
6
See more...

Aliases for TDGP1 Gene

Aliases for TDGP1 Gene

  • Thymine-DNA Glycosylase Pseudogene 1 2 3 5
  • TDGP1 5

External Ids for TDGP1 Gene

Previous GeneCards Identifiers for TDGP1 Gene

  • GC12P025958

Summaries for TDGP1 Gene

GeneCards Summary for TDGP1 Gene

TDGP1 (Thymine-DNA Glycosylase Pseudogene 1) is a Pseudogene.

Additional gene information for TDGP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TDGP1 Gene

Genomics for TDGP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TDGP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J025803 Promoter 0.5 Ensembl 600.7 +0.0 8 0.4 SCRT2 SCRT1 TDGP1 lnc-RASSF8-2 ENSG00000256686 LMNTD1 RASSF8
GH12J025801 Enhancer 0.5 Ensembl 600.7 -1.0 -992 1.2 SCRT2 ZBTB44 CEBPB OSR2 BCL11B PRDM6 TDGP1 lnc-RASSF8-2 RASSF8-AS1 RASSF8 ENSG00000256686 RN7SKP262 lnc-LMNTD1-5 LMNTD1
GH12J025804 Enhancer 0.3 Ensembl 600.7 +1.2 1208 0.4 SCRT2 TDGP1 lnc-RASSF8-2 ENSG00000256686 RASSF8 LMNTD1
GH12J024909 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 34.9 -892.5 -892506 3 GATAD2A TFE3 IKZF1 RCOR2 PKNOX1 RXRB CEBPA FOXK2 EED MNT TDGP1 BCAT1 piR-53338-028 lnc-CASC1-5 SOX5
GH12J025692 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 24.3 -110.9 -110860 4.9 PRDM10 ZNF629 LEF1 ZNF692 JUND PRDM1 ZIC2 PKNOX1 PATZ1 ZNF740 TDGP1 RASSF8 RASSF8-AS1 piR-47628-040 LMNTD1 HSALNG0089935
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TDGP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TDGP1 Gene

Genomic Locations for TDGP1 Gene
chr12:25,803,193-25,806,259
(GRCh38/hg38)
Size:
3,067 bases
Orientation:
Plus strand
chr12:25,956,127-25,959,193
(GRCh37/hg19)
Size:
3,067 bases
Orientation:
Plus strand

Genomic View for TDGP1 Gene

Genes around TDGP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TDGP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TDGP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TDGP1 Gene

Proteins for TDGP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

No data available for DME Specific Peptides for TDGP1 Gene

Domains & Families for TDGP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TDGP1 Gene

Function for TDGP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TDGP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TDGP1 Gene

Localization for TDGP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TDGP1 Gene

Pathways & Interactions for TDGP1 Gene

PathCards logo

SuperPathways for TDGP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TDGP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TDGP1 Gene

Drugs & Compounds for TDGP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TDGP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TDGP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TDGP1 Gene

No ASD Table

Relevant External Links for TDGP1 Gene

GeneLoc Exon Structure for
TDGP1

Expression for TDGP1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TDGP1 Gene

mRNA expression in normal human tissues for TDGP1 Gene
mRNA expression by GTEx for TDGP1 Gene
genes like me logo Genes that share expression patterns with TDGP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TDGP1 Gene

Orthologs for TDGP1 Gene

Evolution for TDGP1 Gene

ENSEMBL:
Gene Tree for TDGP1 (if available)
TreeFam:
Gene Tree for TDGP1 (if available)

No data available for Orthologs for TDGP1 Gene

Paralogs for TDGP1 Gene

No data available for Paralogs for TDGP1 Gene

Variants for TDGP1 Gene

Additional Variant Information for TDGP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TDGP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TDGP1 Gene

Disorders for TDGP1 Gene

No disorders were found for TDGP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TDGP1 Gene

Publications for TDGP1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

ExternalLinks

View latest publications for TDGP1 gene in Mastermind

Products for TDGP1 Gene

Sources for TDGP1 Gene