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Aliases for TDGP1 Gene
External Ids for TDGP1 Gene
- HGNC: 49891
- NCBI Entrez Gene: 645233
- Ensembl: ENSG00000255725
Previous GeneCards Identifiers for TDGP1 Gene
- GC12P025958
Summaries for TDGP1 Gene
GeneCards Summary for TDGP1 Gene
TDGP1 (Thymine-DNA Glycosylase Pseudogene 1) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TDGP1 Gene
Genomics for TDGP1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for TDGP1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J025801 | Enhancer | 0.5 | Ensembl | 250.7 | -1.0 | -992 | 1.2 | CEBPB BCL11B PRDM6 OSR2 ZBTB44 | TDGP1 lnc-RASSF8-2 RASSF8-AS1 RASSF8 ENSG00000256686 RN7SKP262 lnc-LMNTD1-5 LMNTD1 | |
| GH12J025803 | Promoter | 0.4 | Ensembl | 250.7 | +0.0 | 8 | 0.4 | SCRT1 | MK280102 TDGP1 lnc-RASSF8-2 ENSG00000256686 LMNTD1 RASSF8 | |
| GH12J024909 | Enhancer | 1.3 | FANTOM5 ENCODE dbSUPER | 34.9 | -892.5 | -892506 | 3 | CEBPA MNT IKZF1 BHLHE40 THAP11 RAD51 ZNF623 FOXA2 SMAD4 SAP130 | TDGP1 BCAT1 piR-53338-028 lnc-CASC1-5 SOX5 | |
| GH12J025804 | Enhancer | 0.2 | Ensembl | 250.7 | +1.2 | 1208 | 0.4 | MK280102 TDGP1 lnc-RASSF8-2 ENSG00000256686 RASSF8 LMNTD1 | ||
| GH12J025692 | Enhancer | 1.3 | Ensembl ENCODE CraniofacialAtlas | 24.3 | -110.9 | -110860 | 4.9 | FEZF1 BRCA1 BHLHE40 ZIC2 ZNF610 CEBPB ZNF395 GTF2E2 ZNF639 MAX | TDGP1 RASSF8 RASSF8-AS1 HSALNG0089932 LMNTD1 HSALNG0089935 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around TDGP1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for TDGP1 Gene
Latest Assembly
- chr12:25,803,193-25,806,259
- (GRCh38/hg38)
- Size:
- 3,067 bases
- Orientation:
- Plus strand
Previous Assembly
- chr12:25,956,127-25,959,193
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 3,067 bases
- Orientation:
- Plus strand
- chr12:25,956,137-25,957,460
- (GRCh37/hg19 by Ensembl)
- Size:
- 1,324 bases
- Orientation:
- Plus strand
Genomic View for TDGP1 Gene
Genes around TDGP1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p12.1 by HGNC
- 12p12.1 by Entrez Gene
- 12p12.1 by Ensembl
TDGP1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for TDGP1 Gene
Proteins for TDGP1 Gene
Post-translational modifications for TDGP1 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TDGP1
- Origene Custom Protein Services for TDGP1
Assay products for research
No data available for DME Specific Peptides for TDGP1 Gene
Domains & Families for TDGP1 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TDGP1 Gene
Function for TDGP1 Gene
Phenotypes From GWAS Catalog for TDGP1 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Browse CRISPR knockouts for TDGP1
miRNA products for research
Inhibitory RNAs for research
Clone products for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TDGP1 Gene
Localization for TDGP1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TDGP1 Gene
Transcripts for TDGP1 Gene
mRNA/cDNA for TDGP1 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000543961 1229 nts (view in UCSC)
CRISPR products for research
- Browse CRISPR knockouts for TDGP1
miRNA products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for TDGP1 Gene
- GeneLoc Exon Structure for
- TDGP1
Expression for TDGP1 Gene
Primer products for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TDGP1 Gene
Orthologs for TDGP1 Gene
No data available for Orthologs for TDGP1 Gene
Paralogs for TDGP1 Gene
No data available for Paralogs for TDGP1 Gene
Variants for TDGP1 Gene
Additional Variant Information for TDGP1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TDGP1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TDGP1 Gene
Disorders for TDGP1 Gene
No disorders were found for TDGP1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TDGP1 Gene
Publications for TDGP1 Gene
- Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3
ExternalLinks
Products for TDGP1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TDGP1
- Origene Custom Protein Services for TDGP1
- Browse OriGene Inhibitory RNA Products For TDGP1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for TDGP1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For TDGP1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for TDGP1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for TDGP1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for TDGP1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for TDGP1
Sources for TDGP1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB