Aliases for TCF4-AS2 Gene

Subcategory (RNA class) for TCF4-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for TCF4-AS2 Gene

  • TCF4 Antisense RNA 2 2 3 5
  • TCF4-AS2 2 5 165
  • NONHSAG023910.2 91

External Ids for TCF4-AS2 Gene

Previous GeneCards Identifiers for TCF4-AS2 Gene

  • GC00U936269

Summaries for TCF4-AS2 Gene

GeneCards Summary for TCF4-AS2 Gene

TCF4-AS2 (TCF4 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TCF4-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TCF4-AS2 Gene

Genomics for TCF4-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TCF4-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J055492 Enhancer 0.2 Ensembl 600.7 +0.6 626 0.4 TCF4-AS2 lnc-CCDC68-5 lnc-CCDC68-2 TCF4 CCDC68
GH18J055491 Enhancer 0.2 Ensembl 600.7 -0.4 -374 1.2 TCF4-AS2 MIR4529 lnc-CCDC68-5 lnc-CCDC68-2 TCF4 CCDC68
GH18J055488 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.6 -4574 5.6 PRDM10 ZNF692 IKZF2 SCRT2 ZBTB20 RUNX3 ZBTB17 YY1 POLR2A BCL11A TCF4-AS2 MIR4529 lnc-CCDC68-5 lnc-CCDC68-2 TCF4 CCDC68
GH18J055508 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +18.1 18080 4.2 POLR2A PRDM1 SP1 CEBPB RUNX3 ZNF316 MAFF FOS YY1 MAFK TCF4 TCF4-AS2 lnc-CCDC68-5 lnc-CCDC68-2 CCDC68
GH18J055499 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +9.5 9450 4.7 PRDM1 JUND CEBPB RUNX3 FOS CREB1 BHLHE40 MAFK ZNF513 FEZF1 TCF4 TCF4-AS2 lnc-CCDC68-5 lnc-CCDC68-2 CCDC68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TCF4-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TCF4-AS2 Gene

Genomic Locations for TCF4-AS2 Gene
chr18:55,492,175-55,496,392
(GRCh38/hg38)
Size:
4,218 bases
Orientation:
Plus strand
chr18:53,159,406-53,163,623
(GRCh37/hg19)
Size:
4,218 bases
Orientation:
Plus strand

Genomic View for TCF4-AS2 Gene

Genes around TCF4-AS2 on UCSC Golden Path with GeneCards custom track
TCF4-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TCF4-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCF4-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TCF4-AS2 Gene

Proteins for TCF4-AS2 Gene

Post-translational modifications for TCF4-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCF4-AS2 Gene

Domains & Families for TCF4-AS2 Gene

Gene Families for TCF4-AS2 Gene

genes like me logo Genes that share domains with TCF4-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TCF4-AS2 Gene

Function for TCF4-AS2 Gene

Phenotypes From GWAS Catalog for TCF4-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCF4-AS2 Gene

Localization for TCF4-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCF4-AS2 Gene

Pathways & Interactions for TCF4-AS2 Gene

PathCards logo

SuperPathways for TCF4-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TCF4-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TCF4-AS2 Gene

Drugs & Compounds for TCF4-AS2 Gene

No Compound Related Data Available

Transcripts for TCF4-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TCF4-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001BBFEC_9606 lncRNA 445 4

HGNC: 51643,

Ensembl: ENST00000586467 (view in UCSC) ,

LNCipedia: TCF4-AS2:1,

NONCODE: NONHSAT059371.2,

TCF4-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TCF4-AS2 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TCF4-AS2 Gene

No ASD Table

Relevant External Links for TCF4-AS2 Gene

GeneLoc Exon Structure for
TCF4-AS2

Expression for TCF4-AS2 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCF4-AS2 Gene

Orthologs for TCF4-AS2 Gene

Evolution for TCF4-AS2 Gene

ENSEMBL:
Gene Tree for TCF4-AS2 (if available)
TreeFam:
Gene Tree for TCF4-AS2 (if available)

No data available for Orthologs for TCF4-AS2 Gene

Paralogs for TCF4-AS2 Gene

No data available for Paralogs for TCF4-AS2 Gene

Variants for TCF4-AS2 Gene

Additional Variant Information for TCF4-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCF4-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TCF4-AS2 Gene

Disorders for TCF4-AS2 Gene

Additional Disease Information for TCF4-AS2

No disorders were found for TCF4-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCF4-AS2 Gene

Publications for TCF4-AS2 Gene

No publications were found for TCF4-AS2 Gene.

No data available for Mastermind for TCF4-AS2 Gene

Products for TCF4-AS2 Gene

Sources for TCF4-AS2 Gene