TCF4-AS1 Gene (RNA Gene)

TCF4 Antisense RNA 1

GC18P055453
GIFtS:
11
See more...

Aliases for TCF4-AS1 Gene

Subcategory (RNA class) for TCF4-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for TCF4-AS1 Gene

  • TCF4 Antisense RNA 1 2 3 5
  • TCF4-AS1 2 5 165
  • MIR4529HG 2 3
  • MIR4529 Host Gene 2
  • NONHSAG023909.2 91
  • MIR4529 Host 3

External Ids for TCF4-AS1 Gene

Previous GeneCards Identifiers for TCF4-AS1 Gene

  • GC00U936275

Summaries for TCF4-AS1 Gene

GeneCards Summary for TCF4-AS1 Gene

TCF4-AS1 (TCF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TCF4-AS1 include Pitt-Hopkins Syndrome.

Additional gene information for TCF4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TCF4-AS1 Gene

Genomics for TCF4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TCF4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J055451 Enhancer 0.8 Ensembl ENCODE dbSUPER 600.7 -0.4 -390 1.5 FOXA1 ZIC2 NFIC GATA3 PRDM4 EMSY TCF4-AS1 lnc-CCDC68-5 lnc-CCDC68-2 TCF4 lnc-CCDC68-4 CCDC68
GH18J055398 Promoter/Enhancer 2.4 UCNEbase EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -49.1 -49050 10 TEAD4 PRDM10 ZNF629 RFX1 ZNF692 JUND PRDM1 ZSCAN4 PKNOX1 PATZ1 TCF4 LINC01415 TCF4-AS1 lnc-CCDC68-5 lnc-CCDC68-2 lnc-CCDC68-4 CCDC68
GH18J055418 Promoter/Enhancer 1.9 VISTA UCNEbase Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -30.9 -30871 5.7 REST IKZF2 DPF2 RUNX3 ZNF316 MAFF POLR2A SPI1 MAFK PRDM6 TCF4-AS1 lnc-CCDC68-5 lnc-CCDC68-2 lnc-CCDC68-4 TCF4 CCDC68
GH18J055476 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.3 25271 2 IKZF1 ZSCAN4 PKNOX1 SP1 HDAC1 HMBOX1 CTBP1 CTCF IRF2 TAL1 MIR4529 TCF4-AS1 lnc-CCDC68-5 lnc-CCDC68-2 TCF4 CCDC68
GH18J055455 Enhancer 0.4 Ensembl dbSUPER 0.7 +3.6 3568 1 PRDM6 TCF4-AS1 MIR4529 lnc-CCDC68-5 lnc-CCDC68-2 TCF4 CCDC68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TCF4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TCF4-AS1 Gene

Genomic Locations for TCF4-AS1 Gene
chr18:55,452,533-55,482,940
(GRCh38/hg38)
Size:
30,408 bases
Orientation:
Plus strand
chr18:53,119,764-53,150,171
(GRCh37/hg19)
Size:
30,408 bases
Orientation:
Plus strand

Genomic View for TCF4-AS1 Gene

Genes around TCF4-AS1 on UCSC Golden Path with GeneCards custom track
TCF4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TCF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TCF4-AS1 Gene

Proteins for TCF4-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TCF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCF4-AS1 Gene

Domains & Families for TCF4-AS1 Gene

Gene Families for TCF4-AS1 Gene

HGNC:
genes like me logo Genes that share domains with TCF4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TCF4-AS1 Gene

Function for TCF4-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TCF4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCF4-AS1 Gene

Localization for TCF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCF4-AS1 Gene

Pathways & Interactions for TCF4-AS1 Gene

PathCards logo

SuperPathways for TCF4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TCF4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TCF4-AS1 Gene

Drugs & Compounds for TCF4-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TCF4-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TCF4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000036BB34_9606 lncRNA 396 3

Ensembl: ENST00000587660 (view in UCSC) ,

LNCipedia: TCF4-AS1:1,

NONCODE: NONHSAT059369.2,

URS00008E3A6A_9606 lncRNA 396 2

HGNC: 51642,

RefSeq: NR_132985,

TCF4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TCF4-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TCF4-AS1 Gene

No ASD Table

Relevant External Links for TCF4-AS1 Gene

GeneLoc Exon Structure for
TCF4-AS1

Expression for TCF4-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCF4-AS1 Gene

Orthologs for TCF4-AS1 Gene

Evolution for TCF4-AS1 Gene

ENSEMBL:
Gene Tree for TCF4-AS1 (if available)
TreeFam:
Gene Tree for TCF4-AS1 (if available)

No data available for Orthologs for TCF4-AS1 Gene

Paralogs for TCF4-AS1 Gene

No data available for Paralogs for TCF4-AS1 Gene

Variants for TCF4-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TCF4-AS1 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
663089 Uncertain Significance: Pitt-Hopkins syndrome 55,461,099(+) G/A MISSENSE_VARIANT
664799 Uncertain Significance: Pitt-Hopkins syndrome 55,461,045(+) G/A MISSENSE_VARIANT
828035 Pathogenic: Pitt-Hopkins syndrome 55,461,028(+) TG/T FRAMESHIFT_VARIANT
833957 Likely Benign: Pitt-Hopkins syndrome 55,464,135(+) C/A MISSENSE_VARIANT
rs1341051748 Uncertain Significance: Pitt-Hopkins syndrome 55,464,140(+) A/C INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for TCF4-AS1 Gene

Additional Variant Information for TCF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCF4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TCF4-AS1 Gene

Disorders for TCF4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TCF4-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
pitt-hopkins syndrome
  • phs
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TCF4-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with TCF4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TCF4-AS1 Gene

Publications for TCF4-AS1 Gene

No publications were found for TCF4-AS1 Gene.

No data available for Mastermind for TCF4-AS1 Gene

Products for TCF4-AS1 Gene

Sources for TCF4-AS1 Gene