TCF4-AS1 Gene (RNA Gene)

TCF4 Antisense RNA 1

GC18P055453
GIFtS:
12
See more...

Aliases for TCF4-AS1 Gene

Data sources for TCF4-AS1 Gene:

Subcategory (RNA class) for TCF4-AS1 Gene

lncRNA

Aliases for TCF4-AS1 Gene

External Ids for TCF4-AS1 Gene

Previous GeneCards Identifiers for TCF4-AS1 Gene

  • GC00U936275

Summaries for TCF4-AS1 Gene

GeneCards Summary for TCF4-AS1 Gene

TCF4-AS1 (TCF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TCF4-AS1 include Pitt-Hopkins Syndrome.

Additional gene information for TCF4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TCF4-AS1 Gene

Genomics for TCF4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TCF4-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TCF4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TCF4-AS1 Gene

Latest Assembly
chr18:55,452,365-55,483,036
(GRCh38/hg38)
Size:
30,672 bases
Orientation:
Plus strand

Previous Assembly
chr18:53,119,764-53,150,171
(GRCh37/hg19 by Entrez Gene)
Size:
30,408 bases
Orientation:
Plus strand

chr18:53,119,764-53,150,171
(GRCh37/hg19 by Ensembl)
Size:
30,408 bases
Orientation:
Plus strand

Genomic View for TCF4-AS1 Gene

Genes around TCF4-AS1 on UCSC Golden Path with GeneCards custom track
TCF4-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TCF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TCF4-AS1 Gene

Proteins for TCF4-AS1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for TCF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCF4-AS1 Gene

Domains & Families for TCF4-AS1 Gene

Gene Families for TCF4-AS1 Gene

HGNC:
genes like me logo Genes that share domains with TCF4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TCF4-AS1 Gene

Function for TCF4-AS1 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCF4-AS1 Gene

Localization for TCF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCF4-AS1 Gene

Pathways & Interactions for TCF4-AS1 Gene

PathCards logo

SuperPathways for TCF4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TCF4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TCF4-AS1 Gene

Drugs & Compounds for TCF4-AS1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for TCF4-AS1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TCF4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000036BB34_9606 lncRNA 396 3

Ensembl: ENST00000587660 (view in UCSC) ,

LNCipedia: TCF4-AS1:1,

NONCODE: NONHSAT059369.2,

URS00008E3A6A_9606 lncRNA 396 1

RefSeq: NR_132985,

URS0001BCC7F8_9606 lncRNA 660 1

LncBook: HSALNT0251506,

TCF4-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TCF4-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TCF4-AS1 Gene

No ASD Table

Relevant External Links for TCF4-AS1 Gene

GeneLoc Exon Structure for
TCF4-AS1

Expression for TCF4-AS1 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCF4-AS1 Gene

Orthologs for TCF4-AS1 Gene

Evolution for TCF4-AS1 Gene

ENSEMBL:
Gene Tree for TCF4-AS1 (if available)
TreeFam:
Gene Tree for TCF4-AS1 (if available)

No data available for Orthologs for TCF4-AS1 Gene

Paralogs for TCF4-AS1 Gene

No data available for Paralogs for TCF4-AS1 Gene

Variants for TCF4-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TCF4-AS1 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
833957 Likely Benign: Pitt-Hopkins syndrome 55,464,135(+) C/A
NM_001083962.2(TCF4):c.148G>T (p.Val50Leu) 		MISSENSE
rs1341051748 Uncertain Significance: Pitt-Hopkins syndrome 55,464,140(+) A/C
NM_001083962.2(TCF4):c.146-3T>G 		INTRON
rs143244149 Benign/Likely Benign: Pitt-Hopkins syndrome; History of neurodevelopmental disorder; not specified 55,461,054(+) T/C
NM_001083962.2(TCF4):c.269A>G (p.Asn90Ser) 		MISSENSE
rs1555672050 Uncertain Significance: Pitt-Hopkins syndrome 55,464,101(+) T/C
NM_001083962.2(TCF4):c.182A>G (p.Asn61Ser) 		MISSENSE
rs1568107383 Likely Benign: Pitt-Hopkins syndrome 55,461,033(+) T/C
NM_001083962.2(TCF4):c.290A>G (p.Asn97Ser) 		MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TCF4-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TCF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCF4-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TCF4-AS1 Gene

Disorders for TCF4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TCF4-AS1 Gene - From: CVR and GCD

Disorder Aliases PubMed IDs
pitt-hopkins syndrome
  • pths
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TCF4-AS1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with TCF4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TCF4-AS1 Gene

Publications for TCF4-AS1 Gene

No publications were found for TCF4-AS1 Gene.

No data available for Mastermind for TCF4-AS1 Gene

Products for TCF4-AS1 Gene

Sources for TCF4-AS1 Gene