Aliases for TCF4-AS1 Gene

Data sources for TCF4-AS1 Gene:

Subcategory (RNA class) for TCF4-AS1 Gene

lncRNA

Aliases for TCF4-AS1 Gene

External Ids for TCF4-AS1 Gene

Previous GeneCards Identifiers for TCF4-AS1 Gene

  • GC00U936275

Summaries for TCF4-AS1 Gene

GeneCards Summary for TCF4-AS1 Gene

TCF4-AS1 (TCF4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TCF4-AS1 include Pitt-Hopkins Syndrome.

Additional gene information for TCF4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TCF4-AS1 Gene

Genomics for TCF4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TCF4-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TCF4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TCF4-AS1 Gene

Latest Assembly
chr18:55,452,365-55,483,036
(GRCh38/hg38)
Size:
30,672 bases
Orientation:
Plus strand

Previous Assembly
chr18:53,119,764-53,150,171
(GRCh37/hg19 by Entrez Gene)
Size:
30,408 bases
Orientation:
Plus strand

chr18:53,119,764-53,150,171
(GRCh37/hg19 by Ensembl)
Size:
30,408 bases
Orientation:
Plus strand

Genomic View for TCF4-AS1 Gene

Genes around TCF4-AS1 on UCSC Golden Path with GeneCards custom track
TCF4-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TCF4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCF4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCF4-AS1 Gene

Proteins for TCF4-AS1 Gene

Post-translational modifications for TCF4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCF4-AS1 Gene

Domains & Families for TCF4-AS1 Gene

Gene Families for TCF4-AS1 Gene

genes like me logo Genes that share domains with TCF4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TCF4-AS1 Gene

Function for TCF4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCF4-AS1 Gene

Localization for TCF4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCF4-AS1 Gene

Pathways & Interactions for TCF4-AS1 Gene

PathCards logo

SuperPathways for TCF4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TCF4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TCF4-AS1 Gene

Drugs & Compounds for TCF4-AS1 Gene

No Compound Related Data Available

Transcripts for TCF4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TCF4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000036BB34_9606 lncRNA 396 3

Ensembl: ENST00000587660 (view in UCSC) ,

LNCipedia: TCF4-AS1:1,

NONCODE: NONHSAT059369.2,

URS00008E3A6A_9606 lncRNA 396 1

RefSeq: NR_132985,

URS0001BCC7F8_9606 lncRNA 660 1

LncBook: HSALNT0251506,

TCF4-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TCF4-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TCF4-AS1 Gene

No ASD Table

Relevant External Links for TCF4-AS1 Gene

GeneLoc Exon Structure for
TCF4-AS1

Expression for TCF4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCF4-AS1 Gene

Orthologs for TCF4-AS1 Gene

Evolution for TCF4-AS1 Gene

ENSEMBL:
Gene Tree for TCF4-AS1 (if available)
TreeFam:
Gene Tree for TCF4-AS1 (if available)

No data available for Orthologs for TCF4-AS1 Gene

Paralogs for TCF4-AS1 Gene

No data available for Paralogs for TCF4-AS1 Gene

Variants for TCF4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TCF4-AS1 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
833957 Likely Benign: Pitt-Hopkins syndrome 55,464,135(+) C/A
NM_001083962.2(TCF4):c.148G>T (p.Val50Leu)
MISSENSE
rs1341051748 Uncertain Significance: Pitt-Hopkins syndrome 55,464,140(+) A/C
NM_001083962.2(TCF4):c.146-3T>G
INTRON
rs143244149 Benign/Likely Benign: Pitt-Hopkins syndrome; History of neurodevelopmental disorder; not specified 55,461,054(+) T/C
NM_001083962.2(TCF4):c.269A>G (p.Asn90Ser)
MISSENSE
rs1555672050 Uncertain Significance: Pitt-Hopkins syndrome 55,464,101(+) T/C
NM_001083962.2(TCF4):c.182A>G (p.Asn61Ser)
MISSENSE
rs1568107383 Likely Benign: Pitt-Hopkins syndrome 55,461,033(+) T/C
NM_001083962.2(TCF4):c.290A>G (p.Asn97Ser)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TCF4-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TCF4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCF4-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TCF4-AS1 Gene

Disorders for TCF4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TCF4-AS1 Gene - From: CVR and GCD

Disorder Aliases PubMed IDs
pitt-hopkins syndrome
  • pths
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TCF4-AS1

genes like me logo Genes that share disorders with TCF4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TCF4-AS1 Gene

Publications for TCF4-AS1 Gene

No publications were found for TCF4-AS1 Gene.

No data available for Mastermind for TCF4-AS1 Gene

Products for TCF4-AS1 Gene

Sources for TCF4-AS1 Gene