Aliases for TCERG1L-AS1 Gene

Subcategory (RNA class) for TCERG1L-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for TCERG1L-AS1 Gene

  • TCERG1L Antisense RNA 1 2 3 5
  • TCERG1L-AS1 2 170
  • HSALNG0081682 169
  • NONHSAG007199 94

External Ids for TCERG1L-AS1 Gene

Previous GeneCards Identifiers for TCERG1L-AS1 Gene

  • GC10P132894

Summaries for TCERG1L-AS1 Gene

GeneCards Summary for TCERG1L-AS1 Gene

TCERG1L-AS1 (TCERG1L Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TCERG1L-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TCERG1L-AS1 Gene

Genomics for TCERG1L-AS1 Gene

GeneHancer (GH) Regulatory Elements for TCERG1L-AS1 Gene

Promoters and enhancers for TCERG1L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J131093 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 750.6 -0.7 -711 2.2 ZNF512B ZBTB48 GABPA NR2F2 ZNF366 ZNF398 ZBTB21 TCERG1L-AS1 piR-36939 TCERG1L
GH10J131131 Enhancer 0.5 Ensembl ENCODE 11.9 +37.0 36981 2 SP1 FOS TCERG1L-AS1 HSALNG0081684 lnc-PPP2R2D-8 TCERG1L
GH10J131068 Enhancer 0.3 Ensembl 12.7 -26.7 -26717 1 ZBTB11 GABPA HSALNG0081680 TCERG1L-AS1 HSALNG0081678
GH10J131065 Enhancer 0.3 Ensembl ENCODE 12.7 -29.1 -29117 1.4 TCERG1L-AS1 HSALNG0081680 HSALNG0081678
GH10J131063 Enhancer 0.2 Ensembl 12.7 -31.2 -31217 0.4 TCERG1L-AS1 HSALNG0081680 HSALNG0081678
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TCERG1L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TCERG1L-AS1 Gene

Genomic Locations for TCERG1L-AS1 Gene
chr10:131,095,218-131,095,778
(GRCh38/hg38)
Size:
561 bases
Orientation:
Plus strand
chr10:132,893,481-132,894,040
(GRCh37/hg19)
Size:
560 bases
Orientation:
Plus strand

Genomic View for TCERG1L-AS1 Gene

Genes around TCERG1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCERG1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCERG1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCERG1L-AS1 Gene

Proteins for TCERG1L-AS1 Gene

Post-translational modifications for TCERG1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCERG1L-AS1 Gene

Domains & Families for TCERG1L-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TCERG1L-AS1 Gene

Function for TCERG1L-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCERG1L-AS1 Gene

Localization for TCERG1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCERG1L-AS1 Gene

Pathways & Interactions for TCERG1L-AS1 Gene

PathCards logo

SuperPathways for TCERG1L-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TCERG1L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCERG1L-AS1 Gene

Drugs & Compounds for TCERG1L-AS1 Gene

No Compound Related Data Available

Transcripts for TCERG1L-AS1 Gene

mRNA/cDNA for TCERG1L-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(2) RNACentral transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TCERG1L-AS1 Gene

No ASD Table

Relevant External Links for TCERG1L-AS1 Gene

GeneLoc Exon Structure for
TCERG1L-AS1
ECgene alternative splicing isoforms for
TCERG1L-AS1

Expression for TCERG1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCERG1L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TCERG1L-AS1 Gene

This gene is overexpressed in Thyroid (x10.4), Brain - Cortex (x5.1), and Cervix - Endocervix (x4.0).
genes like me logo Genes that share expression patterns with TCERG1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCERG1L-AS1 Gene

Orthologs for TCERG1L-AS1 Gene

Evolution for TCERG1L-AS1 Gene

ENSEMBL:
Gene Tree for TCERG1L-AS1 (if available)
TreeFam:
Gene Tree for TCERG1L-AS1 (if available)

No data available for Orthologs for TCERG1L-AS1 Gene

Paralogs for TCERG1L-AS1 Gene

No data available for Paralogs for TCERG1L-AS1 Gene

Variants for TCERG1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for TCERG1L-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1001289221 -- 131,096,081(+) T/G downstream_transcript_variant
rs1002103342 -- 131,095,206(+) C/T upstream_transcript_variant
rs1003348068 -- 131,093,394(+) G/A upstream_transcript_variant
rs1003424416 -- 131,094,094(+) G/A upstream_transcript_variant
rs1004852203 -- 131,094,288(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TCERG1L-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1048253 CNV gain 25217958
nsv1054934 CNV gain 25217958
nsv428242 CNV gain 18775914
nsv470974 CNV gain 18288195
nsv7621 CNV deletion 18451855
nsv832027 CNV gain 17160897

Additional Variant Information for TCERG1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCERG1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCERG1L-AS1 Gene

Disorders for TCERG1L-AS1 Gene

Additional Disease Information for TCERG1L-AS1

No disorders were found for TCERG1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCERG1L-AS1 Gene

Publications for TCERG1L-AS1 Gene

No publications were found for TCERG1L-AS1 Gene.

No data available for External Links for TCERG1L-AS1 Gene

Products for TCERG1L-AS1 Gene

Sources for TCERG1L-AS1 Gene