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Aliases for TCAM1P Gene

Aliases for TCAM1P Gene

  • Testicular Cell Adhesion Molecule 1, Pseudogene 2 3 5
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse), Pseudogene 2
  • Testicular Cell Adhesion Molecule 1 Homolog, Pseudogene 3
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse) 2
  • TCAM1 3

External Ids for TCAM1P Gene

Previous HGNC Symbols for TCAM1P Gene

  • TCAM1

Previous GeneCards Identifiers for TCAM1P Gene

  • GC17P061927

Summaries for TCAM1P Gene

Entrez Gene Summary for TCAM1P Gene

  • This pseudogene is located downstream from the growth hormone locus on chromosome 17. This locus evolved by a series of partial duplications that have disrupted the human gene. A homologous gene in mouse encodes a testis-specific cell adhesion protein that may play a role in germ cell-Sertoli cell interactions. [provided by RefSeq, Apr 2012]

GeneCards Summary for TCAM1P Gene

TCAM1P (Testicular Cell Adhesion Molecule 1, Pseudogene) is a Pseudogene.

Additional gene information for TCAM1P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAM1P Gene

Genomics for TCAM1P Gene

GeneHancer (GH) Regulatory Elements for TCAM1P Gene

Promoters and enhancers for TCAM1P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063848 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 600.7 -0.1 -100 1.5 SP1 CC2D1A ZFX SIX5 CBFA2T2 MLLT1 GTF2F1 CSDE1 ZNF687 CTCF TCAM1P DDX42 FTSJ3 CEP95 CSH2 POLG2 DDX5 SMARCD2 EEF1DP7 PLEKHM1P1
GH17J063600 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 9.9 -248.0 -248016 2.5 MTA3 SP1 ZNF652 ZFX CC2D1A ELF3 SIX5 NKRF POLR2A MLLT1 TACO1 POLG2 FTSJ3 CEP95 DDX5 SMARCD2 DDX42 DCAF7 MAP3K3 RNU6-288P
GH17J063694 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 6.1 -150.0 -150021 10.2 SP1 ELF3 CTCF ZNF148 NKRF POLR2A CEBPG ZNF687 MAFK ELF1 STRADA ENSG00000279369 LIMD2 PIR54058 LOC729683 GC17M063699 GC17M063698 FTSJ3 CSH2 ENSG00000125695
GH17J062869 Enhancer 1.2 FANTOM5 Ensembl ENCODE 9.8 -979.4 -979391 3.4 MTA3 SP1 PRDM1 MZF1 ARID3A YBX1 RFX1 ZBTB33 TARDBP POLR2A FTSJ3 SMARCD2 MED13 ENSG00000239246 DDX42 INTS2 RNU6-446P MRC2 CYB561 DCAF7
GH17J063438 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 4.9 -409.8 -409762 3.1 ZBTB33 ESRRA MLLT1 YY1 RCOR1 CTCF HIC1 MTA1 IKZF1 KLF1 CYB561 GC17P063438 TCAM1P ENSG00000265971 GC17M063420
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TCAM1P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TCAM1P Gene

Genomic Locations for TCAM1P Gene
chr17:63,849,292-63,864,379
(GRCh38/hg38)
Size:
15,088 bases
Orientation:
Plus strand
chr17:61,926,652-61,941,739
(GRCh37/hg19)
Size:
15,088 bases
Orientation:
Plus strand

Genomic View for TCAM1P Gene

Genes around TCAM1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCAM1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCAM1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAM1P Gene

Proteins for TCAM1P Gene

Post-translational modifications for TCAM1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAM1P Gene

Domains & Families for TCAM1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAM1P Gene

Function for TCAM1P Gene

Phenotypes From GWAS Catalog for TCAM1P Gene

Animal Model Products

CRISPR Products

miRNA for TCAM1P Gene

miRTarBase miRNAs that target TCAM1P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TCAM1P Gene

Localization for TCAM1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCAM1P Gene

Pathways & Interactions for TCAM1P Gene

PathCards logo

SuperPathways for TCAM1P Gene

No Data Available

Interacting Proteins for TCAM1P Gene

Gene Ontology (GO) - Biological Process for TCAM1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCAM1P Gene

Drugs & Compounds for TCAM1P Gene

No Compound Related Data Available

Transcripts for TCAM1P Gene

mRNA/cDNA for TCAM1P Gene

(7) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for TCAM1P Gene

Testicular cell adhesion molecule 1, pseudogene:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCAM1P Gene

No ASD Table

Relevant External Links for TCAM1P Gene

GeneLoc Exon Structure for
TCAM1P
ECgene alternative splicing isoforms for
TCAM1P

Expression for TCAM1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCAM1P Gene

mRNA differential expression in normal tissues according to GTEx for TCAM1P Gene

This gene is overexpressed in Testis (x39.7).

NURSA nuclear receptor signaling pathways regulating expression of TCAM1P Gene:

TCAM1P

SOURCE GeneReport for Unigene cluster for TCAM1P Gene:

Hs.629177
genes like me logo Genes that share expression patterns with TCAM1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCAM1P Gene

Orthologs for TCAM1P Gene

Evolution for TCAM1P Gene

ENSEMBL:
Gene Tree for TCAM1P (if available)
TreeFam:
Gene Tree for TCAM1P (if available)

No data available for Orthologs for TCAM1P Gene

Paralogs for TCAM1P Gene

No data available for Paralogs for TCAM1P Gene

Variants for TCAM1P Gene

Sequence variations from dbSNP and Humsavar for TCAM1P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000251106 -- 63,857,102(+) T/C non_coding_transcript_variant
rs1000939449 -- 63,858,215(+) C/G intron_variant
rs1001147227 -- 63,860,208(+) A/G non_coding_transcript_variant
rs1001753606 -- 63,863,830(+) T/C non_coding_transcript_variant
rs1001809560 -- 63,856,555(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TCAM1P Gene

Variant ID Type Subtype PubMed ID
esv2716098 CNV deletion 23290073
esv3573787 CNV gain 25503493
esv3582856 CNV loss 25503493
nsv510720 CNV deletion 20534489
nsv517272 CNV gain+loss 19592680
nsv833510 CNV loss 17160897
nsv954553 CNV deletion 24416366
nsv960135 CNV duplication 23825009

Additional Variant Information for TCAM1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCAM1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCAM1P Gene

Disorders for TCAM1P Gene

Additional Disease Information for TCAM1P

No disorders were found for TCAM1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCAM1P Gene

Publications for TCAM1P Gene

  1. Testicular cell adhesion molecule 1 (TCAM1) is not essential for fertility. (PMID: 19766163) Nalam RL … Matzuk MM (Molecular and cellular endocrinology 2010) 2 3 58
  2. Structure, expression, and conserved physical linkage of mouse testicular cell adhesion molecule-1 (TCAM-1) gene. (PMID: 11195349) Sakatani S … Ono M (Genome 2000) 2 3 58
  3. The human growth hormone locus: nucleotide sequence, biology, and evolution. (PMID: 2744760) Chen EY … Seeburg PH (Genomics 1989) 2 3 58
  4. Characterization of the human TCAM1P pseudogene and its activation by a potential dual promoter-enhancer: comparison with a protein-coding mouse orthologue. (PMID: 25622893) Kurihara M … Kimura AP (FEBS letters 2015) 3 58
  5. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 58

Products for TCAM1P Gene

Sources for TCAM1P Gene

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