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Aliases for TCAF2P1 Gene

Aliases for TCAF2P1 Gene

  • TRPM8 Channel Associated Factor 2 Pseudogene 1 2 3 5
  • Family With Sequence Similarity 115, Member D (Pseudogene) 2 3
  • Family With Sequence Similarity 139, Member B 2 3
  • TRPM8 Channel-Associated Factor 2 Pseudogene 1 2
  • TCAF2BP 3
  • FAM115D 3
  • FAM139B 3

External Ids for TCAF2P1 Gene

Previous HGNC Symbols for TCAF2P1 Gene

  • FAM139B
  • FAM115D

Summaries for TCAF2P1 Gene

GeneCards Summary for TCAF2P1 Gene

TCAF2P1 (TRPM8 Channel Associated Factor 2 Pseudogene 1) is a Pseudogene.

Additional gene information for TCAF2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAF2P1 Gene

Genomics for TCAF2P1 Gene

GeneHancer (GH) Regulatory Elements for TCAF2P1 Gene

Promoters and enhancers for TCAF2P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I143835 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.3 +35.9 35869 2 CTCF HDAC1 PKNOX1 ATF1 RB1 SAP130 ZIC2 ZNF335 ZFHX2 GLIS2 PIR33226 LOC154761 LOC105375550 TCAF2P1
GH07I143796 Enhancer 0.2 Ensembl 0.8 -4.3 -4331 0.4 RPL26P24 TCAF2P1 LOC154761
GH07I143806 Enhancer 0.2 Ensembl 0.4 +6.4 6416 1.4 TCAF2P1 LOC105375550 LOC154761
GH07I143821 Enhancer 0.2 Ensembl 0.3 +21.0 21013 1.3 LOC105375550 LOC154761 TCAF2P1
GH07I143823 Enhancer 0.2 Ensembl 0.3 +23.6 23569 1.4 TCAF2 LOC105375550 LOC154761 TCAF2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TCAF2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TCAF2P1 Gene

Genomic Locations for TCAF2P1 Gene
17,242 bases
Plus strand

Genomic View for TCAF2P1 Gene

Genes around TCAF2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCAF2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCAF2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAF2P1 Gene

Proteins for TCAF2P1 Gene

Post-translational modifications for TCAF2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAF2P1 Gene

Domains & Families for TCAF2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAF2P1 Gene

Function for TCAF2P1 Gene

Animal Model Products

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No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCAF2P1 Gene

Localization for TCAF2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCAF2P1 Gene

Pathways & Interactions for TCAF2P1 Gene

SuperPathways for TCAF2P1 Gene

No Data Available

Interacting Proteins for TCAF2P1 Gene

Gene Ontology (GO) - Biological Process for TCAF2P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TCAF2P1 Gene

Drugs & Compounds for TCAF2P1 Gene

No Compound Related Data Available

Transcripts for TCAF2P1 Gene

mRNA/cDNA for TCAF2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCAF2P1 Gene

No ASD Table

Relevant External Links for TCAF2P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TCAF2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCAF2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TCAF2P1 Gene:

genes like me logo Genes that share expression patterns with TCAF2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCAF2P1 Gene

Orthologs for TCAF2P1 Gene

Evolution for TCAF2P1 Gene

Gene Tree for TCAF2P1 (if available)
Gene Tree for TCAF2P1 (if available)

No data available for Orthologs for TCAF2P1 Gene

Paralogs for TCAF2P1 Gene

No data available for Paralogs for TCAF2P1 Gene

Variants for TCAF2P1 Gene

Sequence variations from dbSNP and Humsavar for TCAF2P1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1001724796 -- 143,809,112(+) C/G upstream_transcript_variant
rs1006076885 -- 143,811,921(+) A/G intron_variant
rs1006106314 -- 143,809,560(+) TT/T upstream_transcript_variant
rs1007499790 -- 143,815,058(+) C/T non_coding_transcript_variant
rs1007572132 -- 143,812,257(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TCAF2P1 Gene

Variant ID Type Subtype PubMed ID
dgv12n29 CNV gain+loss 16826518
dgv249n111 CNV duplication 26073780
dgv250n111 CNV duplication 26073780
dgv251n111 CNV duplication 26073780
dgv252n111 CNV duplication 26073780
dgv6699n100 CNV gain 25217958
dgv6700n100 CNV gain 25217958
dgv6701n100 CNV gain 25217958
dgv6702n100 CNV gain 25217958
dgv6703n100 CNV loss 25217958
dgv6704n100 CNV loss 25217958
dgv6705n100 CNV gain+loss 25217958
dgv6706n100 CNV loss 25217958
dgv6707n100 CNV loss 25217958
dgv6709n100 CNV loss 25217958
dgv6710n100 CNV loss 25217958
dgv6711n100 CNV gain 25217958
dgv6712n100 CNV loss 25217958
dgv6714n100 CNV gain+loss 25217958
dgv6715n100 CNV gain+loss 25217958
dgv6716n100 CNV gain 25217958
dgv6717n100 CNV gain+loss 25217958
dgv6718n100 CNV gain 25217958
dgv6719n100 CNV loss 25217958
dgv6720n100 CNV gain+loss 25217958
dgv6721n100 CNV gain+loss 25217958
dgv6722n100 CNV loss 25217958
dgv6723n100 CNV loss 25217958
esv2422489 CNV duplication 17116639
esv2759570 CNV gain+loss 17122850
esv2761113 CNV gain+loss 21179565
esv2761375 CNV gain 21179565
esv29816 CNV gain+loss 19812545
esv3584556 CNV gain 24956385
esv3891220 CNV loss 25118596
esv3891221 CNV loss 25118596
nsv1016831 CNV gain 25217958
nsv1020659 CNV gain+loss 25217958
nsv1022459 CNV gain 25217958
nsv1023621 CNV loss 25217958
nsv1024360 CNV gain+loss 25217958
nsv1027488 CNV gain 25217958
nsv1027829 CNV gain+loss 25217958
nsv1028513 CNV gain+loss 25217958
nsv1029557 CNV gain+loss 25217958
nsv1033465 CNV gain 25217958
nsv1034865 CNV gain 25217958
nsv1076960 CNV deletion 25765185
nsv1140255 OTHER inversion 24896259
nsv1145165 CNV deletion 24896259
nsv1145166 CNV deletion 24896259
nsv1150104 CNV duplication 26484159
nsv1153668 CNV duplication 26484159
nsv1161631 CNV duplication 26073780
nsv1161656 CNV duplication 26073780
nsv16 OTHER inversion 15895083
nsv17 OTHER inversion 15895083
nsv428188 CNV gain+loss 18775914
nsv442210 CNV gain 18776908
nsv469570 CNV gain+loss 16826518
nsv471645 CNV gain+loss 15918152
nsv514455 CNV gain+loss 21397061
nsv522225 CNV gain 19592680
nsv608682 CNV gain 21841781
nsv608683 CNV loss 21841781
nsv608684 CNV loss 21841781
nsv608689 CNV loss 21841781
nsv608690 CNV loss 21841781
nsv7408 OTHER inversion 18451855
nsv8227 CNV gain+loss 18304495
nsv824357 CNV loss 20364138
nsv824358 CNV gain 20364138
nsv949973 CNV deletion 24416366
nsv971554 CNV duplication 23825009

Additional Variant Information for TCAF2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCAF2P1 Gene

Disorders for TCAF2P1 Gene

Additional Disease Information for TCAF2P1

No disorders were found for TCAF2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCAF2P1 Gene

Publications for TCAF2P1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for TCAF2P1 Gene

Sources for TCAF2P1 Gene

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