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Aliases for TBX5-AS1 Gene

Subcategory (RNA class) for TBX5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TBX5-AS1 Gene

  • TBX5 Antisense RNA 1 2 3 5
  • TBX5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TBX5-AS1 Gene

Previous GeneCards Identifiers for TBX5-AS1 Gene

  • GC12P114845

Summaries for TBX5-AS1 Gene

GeneCards Summary for TBX5-AS1 Gene

TBX5-AS1 (TBX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TBX5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBX5-AS1 Gene

Genomics for TBX5-AS1 Gene

GeneHancer (GH) Regulatory Elements for TBX5-AS1 Gene

Promoters and enhancers for TBX5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I114438 Enhancer 0.6 dbSUPER 11.8 +34.2 34151 6.8 SUZ12 CEBPB CBFA2T3 CEBPG ZFHX2 ZNF366 EGR1 HDAC2 ZNF512 CTBP2 TBX5 TBX5-AS1 GC12M114444 GC12M114445 LOC105369998 GC12M114409
GH12I114395 Promoter/Enhancer 1.7 EPDnew FANTOM5 ENCODE dbSUPER 0.8 -2.9 -2890 20.3 CTCF KLF1 CLOCK USF1 NFIB SUZ12 NEUROD1 SIN3A ETS1 E2F1 TBX5 TBX5-AS1 GC12M114409 GC12M114376 LOC105369998
GH12I114392 Enhancer 0.4 dbSUPER 0.4 -14.6 -14609 2.7 SCRT2 EZH2 TBX5 TBX5-AS1 GC12M114376
GH12I114391 Enhancer 0.2 dbSUPER 0.4 -16.5 -16465 0.8 GC12M114376 TBX5 TBX5-AS1
GH12I114384 Enhancer 0.2 dbSUPER 0.3 -23.0 -22952 1.2 GC12M114376 TBX5-AS1 TBX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TBX5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBX5-AS1 Gene

Genomic Locations for TBX5-AS1 Gene
chr12:114,408,191-114,412,832
(GRCh38/hg38)
Size:
4,642 bases
Orientation:
Plus strand
chr12:114,845,996-114,850,637
(GRCh37/hg19)

Genomic View for TBX5-AS1 Gene

Genes around TBX5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX5-AS1 Gene

Proteins for TBX5-AS1 Gene

Post-translational modifications for TBX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX5-AS1 Gene

Domains & Families for TBX5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBX5-AS1 Gene

Function for TBX5-AS1 Gene

Phenotypes for TBX5-AS1 Gene

GenomeRNAi human phenotypes for TBX5-AS1:
genes like me logo Genes that share phenotypes with TBX5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX5-AS1 Gene

Localization for TBX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBX5-AS1 Gene

Pathways & Interactions for TBX5-AS1 Gene

SuperPathways for TBX5-AS1 Gene

No Data Available

Interacting Proteins for TBX5-AS1 Gene

Gene Ontology (GO) - Biological Process for TBX5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBX5-AS1 Gene

Drugs & Compounds for TBX5-AS1 Gene

No Compound Related Data Available

Transcripts for TBX5-AS1 Gene

mRNA/cDNA for TBX5-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TBX5-AS1 Gene

TBX5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TBX5-AS1 Gene

No ASD Table

Relevant External Links for TBX5-AS1 Gene

GeneLoc Exon Structure for
TBX5-AS1
ECgene alternative splicing isoforms for
TBX5-AS1

Expression for TBX5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBX5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TBX5-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x15.8), Lung (x9.3), Esophagus - Muscularis (x6.6), Heart - Left Ventricle (x6.0), and Esophagus - Gastroesophageal Junction (x4.0).

SOURCE GeneReport for Unigene cluster for TBX5-AS1 Gene:

Hs.567915
genes like me logo Genes that share expression patterns with TBX5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX5-AS1 Gene

Orthologs for TBX5-AS1 Gene

Evolution for TBX5-AS1 Gene

ENSEMBL:
Gene Tree for TBX5-AS1 (if available)
TreeFam:
Gene Tree for TBX5-AS1 (if available)

No data available for Orthologs for TBX5-AS1 Gene

Paralogs for TBX5-AS1 Gene

No data available for Paralogs for TBX5-AS1 Gene

Variants for TBX5-AS1 Gene

Sequence variations from dbSNP and Humsavar for TBX5-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs115599823 likely-benign, Holt-Oram syndrome 114,408,320(+) G/A/C intron_variant
rs11837917 benign, Holt-Oram syndrome 114,407,802(+) G/T upstream_transcript_variant
rs148864662 likely-benign, Holt-Oram syndrome 114,408,224(+) C/G non_coding_transcript_variant
rs186472610 likely-benign, Holt-Oram syndrome 114,408,030(+) C/A upstream_transcript_variant
rs186960328 likely-benign, Holt-Oram syndrome 114,408,439(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TBX5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832518 CNV loss 17160897
nsv952486 CNV deletion 24416366
nsv560292 CNV loss 21841781
nsv455720 CNV loss 19166990

Additional Variant Information for TBX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBX5-AS1 Gene

Disorders for TBX5-AS1 Gene

Additional Disease Information for TBX5-AS1

No disorders were found for TBX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBX5-AS1 Gene

Publications for TBX5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for TBX5-AS1 Gene

Sources for TBX5-AS1 Gene

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