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Aliases for TBX2-AS1 Gene

Subcategory (RNA class) for TBX2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for TBX2-AS1 Gene

  • TBX2 Antisense RNA 1 2 3 5

External Ids for TBX2-AS1 Gene

Summaries for TBX2-AS1 Gene

GeneCards Summary for TBX2-AS1 Gene

TBX2-AS1 (TBX2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TBX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBX2-AS1 Gene

Genomics for TBX2-AS1 Gene

GeneHancer (GH) Regulatory Elements for TBX2-AS1 Gene

Promoters and enhancers for TBX2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J061393 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.5 +6.1 6072 24.1 HDGF ZNF652 CTCF ELF3 ZNF148 POLR2A ZNF121 CEBPG RERE ZSCAN21 TBX2 PPM1D MED13 APPBP2 TBX2-AS1 TBX4 C17orf82 ENSG00000267131
GH17J061126 Enhancer 1.2 UCNEbase Ensembl ENCODE 10.1 +283.0 282955 5.2 CREB1 CEBPG NFRKB LARP7 POLR2A NONO NR2F2 SIN3A ATF2 NFXL1 PPM1D MED13 TBX2-AS1 C17orf82 GC17P061124 PIR39324 ENSG00000267667 GC17M061120 BCAS3
GH17J060887 Promoter 1 Ensembl 10.1 +524.2 524154 2 CEBPG NFRKB YY1 ZIC2 ZNF561 CEBPB ZBTB20 ZBTB26 ZBTB48 CHD1 RPS6KB1 TBX2-AS1 C17orf82 APPBP2 GC17P060900 HMGN1P28 BCAS3
GH17J061195 Enhancer 1 UCNEbase ENCODE dbSUPER 10.2 +215.2 215213 0.9 NR2F2 GATA3 COPS2 TBX2-AS1 C17orf82 GC17P061247 GC17M061120 GC17P061246 BCAS3
GH17J061503 Enhancer 1 Ensembl ENCODE 10.3 -93.1 -93144 1.8 SP7 PKNOX1 GATAD2A SOX13 CEBPB JUN ZXDB RCOR1 JUND ZKSCAN8 TBX4 INTS2 NACA2 TBX2-AS1 ENSG00000267137
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TBX2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBX2-AS1 Gene

Genomic Locations for TBX2-AS1 Gene
chr17:61,393,456-61,411,555
(GRCh38/hg38)
Size:
18,100 bases
Orientation:
Minus strand
chr17:59,470,817-59,488,916
(GRCh37/hg19)
Size:
18,100 bases
Orientation:
Minus strand

Genomic View for TBX2-AS1 Gene

Genes around TBX2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX2-AS1 Gene

Proteins for TBX2-AS1 Gene

Post-translational modifications for TBX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX2-AS1 Gene

Domains & Families for TBX2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBX2-AS1 Gene

Function for TBX2-AS1 Gene

Phenotypes From GWAS Catalog for TBX2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX2-AS1 Gene

Localization for TBX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBX2-AS1 Gene

Pathways & Interactions for TBX2-AS1 Gene

PathCards logo

SuperPathways for TBX2-AS1 Gene

No Data Available

Interacting Proteins for TBX2-AS1 Gene

Gene Ontology (GO) - Biological Process for TBX2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBX2-AS1 Gene

Drugs & Compounds for TBX2-AS1 Gene

No Compound Related Data Available

Transcripts for TBX2-AS1 Gene

mRNA/cDNA for TBX2-AS1 Gene

(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TBX2-AS1 Gene

No ASD Table

Relevant External Links for TBX2-AS1 Gene

GeneLoc Exon Structure for
TBX2-AS1
ECgene alternative splicing isoforms for
TBX2-AS1

Expression for TBX2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX2-AS1 Gene

Orthologs for TBX2-AS1 Gene

Evolution for TBX2-AS1 Gene

ENSEMBL:
Gene Tree for TBX2-AS1 (if available)
TreeFam:
Gene Tree for TBX2-AS1 (if available)

No data available for Orthologs for TBX2-AS1 Gene

Paralogs for TBX2-AS1 Gene

No data available for Paralogs for TBX2-AS1 Gene

Variants for TBX2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TBX2-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1364709483 pathogenic, TBX2-related condition 61,400,235(-) G/A upstream_transcript_variant
rs1000197126 -- 61,398,231(-) G/C intron_variant
rs1000423 -- 61,398,281(-) C/T intron_variant
rs1000660871 -- 61,398,454(-) C/T intron_variant
rs1001360007 -- 61,396,063(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TBX2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv43n68 CNV loss 17160897
nsv1126466 CNV deletion 24896259
nsv518130 CNV gain 19592680
nsv952350 CNV deletion 24416366

Additional Variant Information for TBX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBX2-AS1 Gene

Disorders for TBX2-AS1 Gene

Additional Disease Information for TBX2-AS1

No disorders were found for TBX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBX2-AS1 Gene

Publications for TBX2-AS1 Gene

No publications were found for TBX2-AS1 Gene.

Products for TBX2-AS1 Gene

Sources for TBX2-AS1 Gene

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