TBX2-AS1 Gene (RNA Gene)

TBX2 Antisense RNA 1

GC17M061393
GIFtS:
12
See more...

Aliases for TBX2-AS1 Gene

Data sources for TBX2-AS1 Gene:

RNA type for TBX2-AS1 Gene

lncRNA

Aliases for TBX2-AS1 Gene

External Ids for TBX2-AS1 Gene

Previous GeneCards Identifiers for TBX2-AS1 Gene

  • GC17M061359

Summaries for TBX2-AS1 Gene

GeneCards Summary for TBX2-AS1 Gene

TBX2-AS1 (TBX2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TBX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TBX2-AS1 Gene

Genomics for TBX2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for TBX2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TBX2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TBX2-AS1 Gene

Latest Assembly
chr17:61,393,455-61,411,555
(GRCh38/hg38)
Size:
18,101 bases
Orientation:
Minus strand

Previous Assembly
chr17:59,470,817-59,476,967
(GRCh37/hg19 by Entrez Gene)
Size:
6,151 bases
Orientation:
Minus strand

chr17:59,470,817-59,488,916
(GRCh37/hg19 by Ensembl)
Size:
18,100 bases
Orientation:
Minus strand

Genomic View for TBX2-AS1 Gene

Genes around TBX2-AS1 on UCSC Golden Path with GeneCards custom track
TBX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TBX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TBX2-AS1 Gene

Proteins for TBX2-AS1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for TBX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX2-AS1 Gene

Domains & Families for TBX2-AS1 Gene

Gene Families for TBX2-AS1 Gene

HGNC:
genes like me logo Genes that share domains with TBX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TBX2-AS1 Gene

Function for TBX2-AS1 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX2-AS1 Gene

Localization for TBX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBX2-AS1 Gene

Pathways & Interactions for TBX2-AS1 Gene

PathCards logo

SuperPathways for TBX2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TBX2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TBX2-AS1 Gene

Drugs & Compounds for TBX2-AS1 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for TBX2-AS1 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TBX2-AS1 Gene

GeneCaRNA:The Human ncRNA Database 2021 Publication

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000478AD8_9606 lncRNA 640 4

Ensembl: ENST00000591313 (view in UCSC) ,

LncBook: HSALNT0243471,

LNCipedia: TBX2-AS1:11,

NONCODE: NONHSAT055124.2,

URS00002F1E24_9606 lncRNA 539 4

Ensembl: ENST00000589814 (view in UCSC) ,

LncBook: HSALNT0243472,

LNCipedia: TBX2-AS1:13,

NONCODE: NONHSAT055125.2,

URS00003279AF_9606 lncRNA 479 4

Ensembl: ENST00000586706 (view in UCSC) ,

LncBook: HSALNT0243467,

LNCipedia: TBX2-AS1:21,

NONCODE: NONHSAT055123.2,

URS00005070D1_9606 lncRNA 412 4

Ensembl: ENST00000592377 (view in UCSC) ,

LncBook: HSALNT0243464,

LNCipedia: TBX2-AS1:22,

NONCODE: NONHSAT055122.2,

URS000032EE96_9606 lncRNA 863 3

Ensembl: ENST00000590421 (view in UCSC) ,

LncBook: HSALNT0243470,

LNCipedia: TBX2-AS1:7,

TBX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TBX2-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TBX2-AS1 Gene

No ASD Table

Relevant External Links for TBX2-AS1 Gene

GeneLoc Exon Structure for
TBX2-AS1

Expression for TBX2-AS1 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TBX2-AS1 Gene

mRNA expression in normal human tissues for TBX2-AS1 Gene
mRNA expression by GTEx for TBX2-AS1 Gene
genes like me logo Genes that share expression patterns with TBX2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX2-AS1 Gene

Orthologs for TBX2-AS1 Gene

Evolution for TBX2-AS1 Gene

ENSEMBL:
Gene Tree for TBX2-AS1 (if available)
TreeFam:
Gene Tree for TBX2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TBX2-AS1

No data available for Orthologs for TBX2-AS1 Gene

Paralogs for TBX2-AS1 Gene

No data available for Paralogs for TBX2-AS1 Gene

Variants for TBX2-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TBX2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for TBX2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv43n68 CNV loss 17160897
nsv1126466 CNV deletion 24896259
nsv518130 CNV gain 19592680
nsv952350 CNV deletion 24416366

Additional Variant Information for TBX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX2-AS1
Leiden Open Variation Database (LOVD)
TBX2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TBX2-AS1 Gene

Disorders for TBX2-AS1 Gene

Additional Disease Information for TBX2-AS1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for TBX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBX2-AS1 Gene

Publications for TBX2-AS1 Gene

No publications were found for TBX2-AS1 Gene.

ExternalLinks

View latest publications for TBX2-AS1 gene in Mastermind

Products for TBX2-AS1 Gene

Sources for TBX2-AS1 Gene