Aliases for TBX2-AS1 Gene

Data sources for TBX2-AS1 Gene:

RNA type for TBX2-AS1 Gene

lncRNA

Aliases for TBX2-AS1 Gene

External Ids for TBX2-AS1 Gene

Previous GeneCards Identifiers for TBX2-AS1 Gene

  • GC17M061359

Summaries for TBX2-AS1 Gene

GeneCards Summary for TBX2-AS1 Gene

TBX2-AS1 (TBX2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TBX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TBX2-AS1 Gene

Genomics for TBX2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TBX2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TBX2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TBX2-AS1 Gene

Latest Assembly
chr17:61,393,455-61,411,555
(GRCh38/hg38)
Size:
18,101 bases
Orientation:
Minus strand

Previous Assembly
chr17:59,470,817-59,476,967
(GRCh37/hg19 by Entrez Gene)
Size:
6,151 bases
Orientation:
Minus strand

chr17:59,470,817-59,488,916
(GRCh37/hg19 by Ensembl)
Size:
18,100 bases
Orientation:
Minus strand

Genomic View for TBX2-AS1 Gene

Genes around TBX2-AS1 on UCSC Golden Path with GeneCards custom track
TBX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TBX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX2-AS1 Gene

Proteins for TBX2-AS1 Gene

Post-translational modifications for TBX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX2-AS1 Gene

Domains & Families for TBX2-AS1 Gene

Gene Families for TBX2-AS1 Gene

genes like me logo Genes that share domains with TBX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TBX2-AS1 Gene

Function for TBX2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX2-AS1 Gene

Localization for TBX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBX2-AS1 Gene

Pathways & Interactions for TBX2-AS1 Gene

PathCards logo

SuperPathways for TBX2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TBX2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TBX2-AS1 Gene

Drugs & Compounds for TBX2-AS1 Gene

No Compound Related Data Available

Transcripts for TBX2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TBX2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000478AD8_9606 lncRNA 640 4

Ensembl: ENST00000591313 (view in UCSC) ,

LncBook: HSALNT0243471,

LNCipedia: TBX2-AS1:11,

NONCODE: NONHSAT055124.2,

URS00002F1E24_9606 lncRNA 539 4

Ensembl: ENST00000589814 (view in UCSC) ,

LncBook: HSALNT0243472,

LNCipedia: TBX2-AS1:13,

NONCODE: NONHSAT055125.2,

URS00003279AF_9606 lncRNA 479 4

Ensembl: ENST00000586706 (view in UCSC) ,

LncBook: HSALNT0243467,

LNCipedia: TBX2-AS1:21,

NONCODE: NONHSAT055123.2,

URS00005070D1_9606 lncRNA 412 4

Ensembl: ENST00000592377 (view in UCSC) ,

LncBook: HSALNT0243464,

LNCipedia: TBX2-AS1:22,

NONCODE: NONHSAT055122.2,

URS000032EE96_9606 lncRNA 863 3

Ensembl: ENST00000590421 (view in UCSC) ,

LncBook: HSALNT0243470,

LNCipedia: TBX2-AS1:7,

TBX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TBX2-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TBX2-AS1 Gene

No ASD Table

Relevant External Links for TBX2-AS1 Gene

GeneLoc Exon Structure for
TBX2-AS1

Expression for TBX2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TBX2-AS1 Gene

genes like me logo Genes that share expression patterns with TBX2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX2-AS1 Gene

Orthologs for TBX2-AS1 Gene

Evolution for TBX2-AS1 Gene

ENSEMBL:
Gene Tree for TBX2-AS1 (if available)
TreeFam:
Gene Tree for TBX2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TBX2-AS1

No data available for Orthologs for TBX2-AS1 Gene

Paralogs for TBX2-AS1 Gene

No data available for Paralogs for TBX2-AS1 Gene

Variants for TBX2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TBX2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for TBX2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv43n68 CNV loss 17160897
nsv1126466 CNV deletion 24896259
nsv518130 CNV gain 19592680
nsv952350 CNV deletion 24416366

Additional Variant Information for TBX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX2-AS1
Leiden Open Variation Database (LOVD)
TBX2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TBX2-AS1 Gene

Disorders for TBX2-AS1 Gene

Additional Disease Information for TBX2-AS1

No disorders were found for TBX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBX2-AS1 Gene

Publications for TBX2-AS1 Gene

No publications were found for TBX2-AS1 Gene.

Products for TBX2-AS1 Gene

Sources for TBX2-AS1 Gene