Aliases for TBX2-AS1 Gene

Subcategory (RNA class) for TBX2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for TBX2-AS1 Gene

  • TBX2 Antisense RNA 1 2 3 5
  • TBX2-AS1 2 170
  • HSALNG0117877 169
  • NONHSAG022407 94
  • Lnc-NACA2-10 170

External Ids for TBX2-AS1 Gene

Summaries for TBX2-AS1 Gene

GeneCards Summary for TBX2-AS1 Gene

TBX2-AS1 (TBX2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TBX2-AS1 include Vertebral Anomalies And Variable Endocrine And T-Cell Dysfunction.

Additional gene information for TBX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TBX2-AS1 Gene

Genomics for TBX2-AS1 Gene

GeneHancer (GH) Regulatory Elements for TBX2-AS1 Gene

Promoters and enhancers for TBX2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TBX2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBX2-AS1 Gene

Genomic Locations for TBX2-AS1 Gene
chr17:61,393,456-61,411,555
(GRCh38/hg38)
Size:
18,100 bases
Orientation:
Minus strand
chr17:59,470,817-59,488,916
(GRCh37/hg19)
Size:
18,100 bases
Orientation:
Minus strand

Genomic View for TBX2-AS1 Gene

Genes around TBX2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX2-AS1 Gene

Proteins for TBX2-AS1 Gene

Post-translational modifications for TBX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX2-AS1 Gene

Domains & Families for TBX2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TBX2-AS1 Gene

Function for TBX2-AS1 Gene

Phenotypes From GWAS Catalog for TBX2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX2-AS1 Gene

Localization for TBX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBX2-AS1 Gene

Pathways & Interactions for TBX2-AS1 Gene

PathCards logo

SuperPathways for TBX2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TBX2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBX2-AS1 Gene

Drugs & Compounds for TBX2-AS1 Gene

No Compound Related Data Available

Transcripts for TBX2-AS1 Gene

mRNA/cDNA for TBX2-AS1 Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) NONCODE transcripts :
(31) RNACentral transcripts :
(21) LncBook transcripts :
(30) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for TBX2-AS1 Gene

No ASD Table

Relevant External Links for TBX2-AS1 Gene

GeneLoc Exon Structure for
TBX2-AS1
ECgene alternative splicing isoforms for
TBX2-AS1

Expression for TBX2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBX2-AS1 Gene

genes like me logo Genes that share expression patterns with TBX2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX2-AS1 Gene

Orthologs for TBX2-AS1 Gene

Evolution for TBX2-AS1 Gene

ENSEMBL:
Gene Tree for TBX2-AS1 (if available)
TreeFam:
Gene Tree for TBX2-AS1 (if available)

No data available for Orthologs for TBX2-AS1 Gene

Paralogs for TBX2-AS1 Gene

No data available for Paralogs for TBX2-AS1 Gene

Variants for TBX2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TBX2-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1364709483 pathogenic, TBX2-related condition, VERTEBRAL ANOMALIES AND VARIABLE ENDOCRINE AND T-CELL DYSFUNCTION 61,400,235(-) G/A upstream_transcript_variant
rs1000197126 -- 61,398,231(-) G/C intron_variant
rs1000423 -- 61,398,281(-) C/T intron_variant
rs1000660871 -- 61,398,454(-) C/T intron_variant
rs1001360007 -- 61,396,063(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TBX2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv43n68 CNV loss 17160897
nsv1126466 CNV deletion 24896259
nsv518130 CNV gain 19592680
nsv952350 CNV deletion 24416366

Additional Variant Information for TBX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBX2-AS1 Gene

Disorders for TBX2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TBX2-AS1 Gene - From: GeneCards

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for TBX2-AS1

genes like me logo Genes that share disorders with TBX2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TBX2-AS1 Gene

Publications for TBX2-AS1 Gene

No publications were found for TBX2-AS1 Gene.

Products for TBX2-AS1 Gene

Sources for TBX2-AS1 Gene