Aliases for TBC1D29P Gene

Aliases for TBC1D29P Gene

  • TBC1 Domain Family Member 29, Pseudogene 2 3 5
  • Putative TBC1 Domain Family Member 29 3 4
  • TBC1 Domain Family Member 29 2 3
  • TBC1D29 3 4
  • TBC1 Domain Family, Member 29 2

External Ids for TBC1D29P Gene

Previous HGNC Symbols for TBC1D29P Gene

  • TBC1D29

Summaries for TBC1D29P Gene

GeneCards Summary for TBC1D29P Gene

TBC1D29P (TBC1 Domain Family Member 29, Pseudogene) is a Protein Coding gene.

Additional gene information for TBC1D29P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TBC1D29P Gene

Genomics for TBC1D29P Gene

GeneHancer (GH) Regulatory Elements for TBC1D29P Gene

Promoters and enhancers for TBC1D29P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TBC1D29P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBC1D29P Gene

Genomic Locations for TBC1D29P Gene
chr17:30,553,502-30,565,667
(GRCh38/hg38)
Size:
12,166 bases
Orientation:
Plus strand
chr17:28,884,130-28,890,511
(GRCh37/hg19)
Size:
6,382 bases
Orientation:
Plus strand

Genomic View for TBC1D29P Gene

Genes around TBC1D29P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D29P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D29P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D29P Gene

Proteins for TBC1D29P Gene

  • Protein details for TBC1D29P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UFV1-TBC29_HUMAN
    Recommended name:
    Putative TBC1 domain family member 29
    Protein Accession:
    Q9UFV1

    Protein attributes for TBC1D29P Gene

    Size:
    150 amino acids
    Molecular mass:
    16280 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TBC1D29P Gene

Post-translational modifications for TBC1D29P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TBC1D29P Gene

REFSEQ proteins:

No data available for DME Specific Peptides for TBC1D29P Gene

Domains & Families for TBC1D29P Gene

Gene Families for TBC1D29P Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TBC1D29P Gene

Suggested Antigen Peptide Sequences for TBC1D29P Gene

GenScript: Design optimal peptide antigens:
  • Putative TBC1 domain family member 29 (TBC29_HUMAN)
genes like me logo Genes that share domains with TBC1D29P: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TBC1D29P Gene

Function for TBC1D29P Gene

Phenotypes From GWAS Catalog for TBC1D29P Gene

genes like me logo Genes that share phenotypes with TBC1D29P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TBC1D29P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBC1D29P Gene

Localization for TBC1D29P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBC1D29P Gene

Pathways & Interactions for TBC1D29P Gene

PathCards logo

SuperPathways for TBC1D29P Gene

No Data Available

Interacting Proteins for TBC1D29P Gene

Gene Ontology (GO) - Biological Process for TBC1D29P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBC1D29P Gene

Drugs & Compounds for TBC1D29P Gene

No Compound Related Data Available

Transcripts for TBC1D29P Gene

mRNA/cDNA for TBC1D29P Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for TBC1D29P

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D29P Gene

No ASD Table

Relevant External Links for TBC1D29P Gene

GeneLoc Exon Structure for
TBC1D29P
ECgene alternative splicing isoforms for
TBC1D29P

Expression for TBC1D29P Gene

NURSA nuclear receptor signaling pathways regulating expression of TBC1D29P Gene:

TBC1D29P

SOURCE GeneReport for Unigene cluster for TBC1D29P Gene:

Hs.241421
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBC1D29P Gene

Orthologs for TBC1D29P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for TBC1D29P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBC1D29 33
  • 91 (a)
OneToOne
LOC101059380 32
  • 90.88 (n)
Species where no ortholog for TBC1D29P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TBC1D29P Gene

ENSEMBL:
Gene Tree for TBC1D29P (if available)
TreeFam:
Gene Tree for TBC1D29P (if available)
Aminode:
Evolutionary constrained regions (ECRs) for TBC1D29P: view image

Paralogs for TBC1D29P Gene

No data available for Paralogs for TBC1D29P Gene

Variants for TBC1D29P Gene

Sequence variations from dbSNP and Humsavar for TBC1D29P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000096254 -- 30,559,928(+) G/A intron_variant
rs1001645780 -- 30,557,851(+) G/A upstream_transcript_variant
rs1004544346 -- 30,561,862(+) C/A intron_variant
rs1004577267 -- 30,561,600(+) T/G intron_variant
rs1005626496 -- 30,564,610(+) G/A 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for TBC1D29P Gene

Variant ID Type Subtype PubMed ID
dgv3138n100 CNV gain 25217958
esv29095 CNV gain 19812545
esv32561 CNV gain 17666407
esv3640341 CNV gain 21293372
nsv1060557 CNV gain 25217958
nsv1064611 CNV gain 25217958
nsv471394 CNV gain 19718026
nsv515870 CNV gain 19592680
nsv827943 CNV gain 20364138
nsv978404 CNV duplication 23825009

Variation tolerance for TBC1D29P Gene

Residual Variation Intolerance Score: 74.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.37; 8.21% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TBC1D29P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D29P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TBC1D29P Gene

Disorders for TBC1D29P Gene

No disorders were found for TBC1D29P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TBC1D29P Gene

Publications for TBC1D29P Gene

  1. GAPs galore! A survey of putative Ras superfamily GTPase activating proteins in man and Drosophila. (PMID: 12618308) Bernards A (Biochimica et biophysica acta 2003) 2 3 56
  2. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 56
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for TBC1D29P Gene

Sources for TBC1D29P Gene