Aliases for TAT-AS1 Gene

Subcategory (RNA class) for TAT-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for TAT-AS1 Gene

  • TAT Antisense RNA 1 2 3 5
  • TAT-AS1 2 5
  • NONHSAG019893.2 91
  • HSALNG0112492 164
  • Lnc-CHST4-6 165

External Ids for TAT-AS1 Gene

Summaries for TAT-AS1 Gene

GeneCards Summary for TAT-AS1 Gene

TAT-AS1 (TAT Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with TAT-AS1 include Tyrosinemia, Type Ii and Tyrosinemia.

Additional gene information for TAT-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TAT-AS1 Gene

Genomics for TAT-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TAT-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TAT-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TAT-AS1 Gene

Genomic Locations for TAT-AS1 Gene
chr16:71,564,660-71,583,707
(GRCh38/hg38)
Size:
19,048 bases
Orientation:
Plus strand
chr16:71,599,692-71,612,092
(GRCh37/hg19)
Size:
12,401 bases
Orientation:
Plus strand

Genomic View for TAT-AS1 Gene

Genes around TAT-AS1 on UCSC Golden Path with GeneCards custom track
TAT-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
TAT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TAT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAT-AS1 Gene

Proteins for TAT-AS1 Gene

Post-translational modifications for TAT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAT-AS1 Gene

Domains & Families for TAT-AS1 Gene

Gene Families for TAT-AS1 Gene

genes like me logo Genes that share domains with TAT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TAT-AS1 Gene

Function for TAT-AS1 Gene

Phenotypes From GWAS Catalog for TAT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TAT-AS1 Gene

Localization for TAT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TAT-AS1 Gene

Pathways & Interactions for TAT-AS1 Gene

PathCards logo

SuperPathways for TAT-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TAT-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TAT-AS1 Gene

Drugs & Compounds for TAT-AS1 Gene

No Compound Related Data Available

Transcripts for TAT-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TAT-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003AF2EA_9606 lncRNA 873 3

Ensembl: ENST00000561529 (view in UCSC) ,

LncBook: HSALNT0233119,

NONCODE: NONHSAT143493.2,

URS000075B8BC_9606 lncRNA 703 2

HGNC: 51369,

RefSeq: NR_103851,

URS0000EEDC4E_9606 lncRNA 1219 1

Ensembl: ENST00000670228 (view in UCSC) ,

URS0000EF5D34_9606 lncRNA 742 1

Ensembl: ENST00000656895 (view in UCSC) ,

URS0000EF56BD_9606 lncRNA 683 1

Ensembl: ENST00000666821 (view in UCSC) ,

TAT-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TAT-AS1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TAT-AS1 Gene

No ASD Table

Relevant External Links for TAT-AS1 Gene

GeneLoc Exon Structure for
TAT-AS1

Expression for TAT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TAT-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TAT-AS1

genes like me logo Genes that share expression patterns with TAT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TAT-AS1 Gene

Orthologs for TAT-AS1 Gene

Evolution for TAT-AS1 Gene

ENSEMBL:
Gene Tree for TAT-AS1 (if available)
TreeFam:
Gene Tree for TAT-AS1 (if available)

No data available for Orthologs for TAT-AS1 Gene

Paralogs for TAT-AS1 Gene

No data available for Paralogs for TAT-AS1 Gene

Variants for TAT-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TAT-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
665181 Uncertain Significance: Tyrosinemia type II 71,571,649(+) C/T MISSENSE_VARIANT
665810 Uncertain Significance: Tyrosinemia type II 71,572,314(+) G/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
710399 Likely Benign: Tyrosinemia type II 71,570,381(+) A/G MISSENSE_VARIANT
755527 Conflicting Interpretations: Tyrosinemia type II 71,568,219(+) C/T SYNONYMOUS_VARIANT
785768 Benign: Tyrosinemia type II 71,568,267(+) A/G SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for TAT-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for TAT-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv7285 OTHER inversion 18451855

Additional Variant Information for TAT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TAT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TAT-AS1 Gene

Disorders for TAT-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for TAT-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
tyrosinemia, type ii
  • tyrsn2
tyrosinemia
  • hereditary tyrosinemia
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with TAT-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TAT-AS1 Gene

Publications for TAT-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

No data available for Mastermind for TAT-AS1 Gene

Products for TAT-AS1 Gene

Sources for TAT-AS1 Gene