Aliases for TAPT1-AS1 Gene

Data sources for TAPT1-AS1 Gene:

RNA type for TAPT1-AS1 Gene

lncRNA

Aliases for TAPT1-AS1 Gene

External Ids for TAPT1-AS1 Gene

Previous GeneCards Identifiers for TAPT1-AS1 Gene

  • GC04P016231

Summaries for TAPT1-AS1 Gene

GeneCards Summary for TAPT1-AS1 Gene

TAPT1-AS1 (TAPT1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TAPT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TAPT1-AS1 Gene

Genomics for TAPT1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TAPT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J016222 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 256.9 -0.7 -699 6.5 MYC IKZF1 ATF2 CEBPA ATF3 POLR2A YY1 NONO SMAD5 SIN3A TAPT1 TAPT1-AS1 lnc-PROM1-4 piR-52233 piR-57491 PROM1 FGFBP2 piR-41306-198
GH04J016140 Enhancer 1 Ensembl ENCODE 17.2 -85.3 -85270 4.4 CEBPA JUND NFIC CEBPB HOMEZ EP300 FOXA2 KDM6A SMAD4 SAP130 PROM1 TAPT1 TAPT1-AS1 ENSG00000249234 HSALNG0033083 piR-46847-166
GH04J016196 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 8.2 -29.9 -29915 1.3 CTCF ELF1 FOXA1 RAD21 IKZF1 PKNOX1 SPI1 ZNF143 IKZF2 RUNX3 TAPT1 TAPT1-AS1 LOC107986187 HSALNG0033092 lnc-PROM1-4 PROM1
GH04J016250 Enhancer 1 Ensembl ENCODE 6.4 +24.1 24139 1.2 FOXA2 RXRA SMAD4 RARA TEAD3 TCF7L2 FOSL2 JUND CREM FOXP1 PROM1 FGFBP2 TAPT1-AS1 lnc-TAPT1-1 TAPT1 LDB2
GH04J016234 Enhancer 0.7 Ensembl 8.6 +10.8 10838 7 MYC FEZF1 MNT RXRA RARA ZNF316 NFE2 SMARCA4 SPI1 MAX TAPT1-AS1 TAPT1 lnc-TAPT1-1 LDB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TAPT1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TAPT1-AS1 Gene

Latest Assembly
chr4:16,226,662-16,355,742
(GRCh38/hg38)
Size:
129,081 bases
Orientation:
Plus strand

Previous Assembly
chr4:16,228,286-16,259,810
(GRCh37/hg19 by Entrez Gene)
Size:
31,525 bases
Orientation:
Plus strand

chr4:16,228,286-16,321,763
(GRCh37/hg19 by Ensembl)
Size:
93,478 bases
Orientation:
Plus strand

Genomic View for TAPT1-AS1 Gene

Genes around TAPT1-AS1 on UCSC Golden Path with GeneCards custom track
TAPT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TAPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TAPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAPT1-AS1 Gene

Proteins for TAPT1-AS1 Gene

Post-translational modifications for TAPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAPT1-AS1 Gene

Domains & Families for TAPT1-AS1 Gene

Gene Families for TAPT1-AS1 Gene

genes like me logo Genes that share domains with TAPT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TAPT1-AS1 Gene

Function for TAPT1-AS1 Gene

Phenotypes From GWAS Catalog for TAPT1-AS1 Gene

Phenotypes for TAPT1-AS1 Gene

GenomeRNAi human phenotypes for TAPT1-AS1:
genes like me logo Genes that share phenotypes with TAPT1-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TAPT1-AS1 Gene

Localization for TAPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TAPT1-AS1 Gene

Pathways & Interactions for TAPT1-AS1 Gene

PathCards logo

SuperPathways for TAPT1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TAPT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TAPT1-AS1 Gene

Drugs & Compounds for TAPT1-AS1 Gene

No Compound Related Data Available

Transcripts for TAPT1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TAPT1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075A9DF_9606 lncRNA 2550 3

RefSeq: NR_027696,

LNCipedia: TAPT1-AS1:1, TAPT1-AS1:15,

NONCODE: NONHSAT095672.2,

URS000075E7C1_9606 lncRNA 2499 3

RefSeq: NR_027697,

LNCipedia: TAPT1-AS1:3,

NONCODE: NONHSAT095674.2,

URS00001B1316_9606 lncRNA 514 3

Ensembl: ENST00000573950 (view in UCSC) ,

LNCipedia: TAPT1-AS1:5,

NONCODE: NONHSAT095675.2,

URS000026BD6D_9606 lncRNA 2165 2

Ensembl: ENST00000570786 (view in UCSC) ,

LNCipedia: TAPT1-AS1:6,

URS000021E224_9606 lncRNA 1031 2

Ensembl: ENST00000573308 (view in UCSC) ,

LNCipedia: TAPT1-AS1:4,

TAPT1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TAPT1-AS1 Gene

1 REFSEQ mRNAs :
14 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TAPT1-AS1 Gene

No ASD Table

Relevant External Links for TAPT1-AS1 Gene

GeneLoc Exon Structure for
TAPT1-AS1

Expression for TAPT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TAPT1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TAPT1-AS1

SOURCE GeneReport for Unigene cluster for TAPT1-AS1 Gene:

Hs.445315
genes like me logo Genes that share expression patterns with TAPT1-AS1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TAPT1-AS1 Gene

Orthologs for TAPT1-AS1 Gene

Evolution for TAPT1-AS1 Gene

ENSEMBL:
Gene Tree for TAPT1-AS1 (if available)
TreeFam:
Gene Tree for TAPT1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TAPT1-AS1

No data available for Orthologs for TAPT1-AS1 Gene

Paralogs for TAPT1-AS1 Gene

No data available for Paralogs for TAPT1-AS1 Gene

Variants for TAPT1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TAPT1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for TAPT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8979n54 CNV loss 21841781
dgv8980n54 CNV gain 21841781
esv24752 CNV loss 19812545
esv3893887 CNV loss 25118596
nsv1074696 CNV deletion 25765185
nsv1144075 CNV deletion 24896259
nsv527861 CNV gain 19592680
nsv593775 CNV gain+loss 21841781
nsv593778 CNV gain 21841781
nsv967728 CNV duplication 23825009

Additional Variant Information for TAPT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TAPT1-AS1
Leiden Open Variation Database (LOVD)
TAPT1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for TAPT1-AS1 Gene

Disorders for TAPT1-AS1 Gene

Additional Disease Information for TAPT1-AS1

No disorders were found for TAPT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TAPT1-AS1 Gene

Publications for TAPT1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G … Peterson K (Molecular vision 2002) 3

Products for TAPT1-AS1 Gene

Sources for TAPT1-AS1 Gene