Aliases for TAF5LP1 Gene

Aliases for TAF5LP1 Gene

  • TATA-Box Binding Protein Associated Factor 5 Like Pseudogene 1 2 3 5
  • TAF5-Like RNA Polymerase II, P300/CBP-Associated Factor (PCAF)-Associated Factor, 65kDa Pseudogene 1 2 3
  • TAF5-Like RNA Polymerase II Pseudogene 2 3
  • HsT33855 2 3
  • TAF5LP1 5
  • TAF5LP 3

External Ids for TAF5LP1 Gene

Previous HGNC Symbols for TAF5LP1 Gene

  • TAF5LP

Previous GeneCards Identifiers for TAF5LP1 Gene

  • GC17P030010
  • GC17P033827

Summaries for TAF5LP1 Gene

GeneCards Summary for TAF5LP1 Gene

TAF5LP1 (TATA-Box Binding Protein Associated Factor 5 Like Pseudogene 1) is a Pseudogene.

Additional gene information for TAF5LP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TAF5LP1 Gene

Genomics for TAF5LP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TAF5LP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J035498 Enhancer 0.3 FANTOM5 250.7 -0.1 -63 0.4 EZH2 TAF5LP1 SLFN12L AP2B1 CCL5 SLFN5 E2F3P1 HSALNG0115952 SLFN13
GH17J035533 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.8 +39.6 39644 9 BCLAF1 ZNF654 ZNF592 NFIC YY1 CTCF REST SIN3A TRIM22 MBD2 SLFN12L HSALNG0115952 HSALNG0115956 LOC107985032 AP2B1 CCL5 ZNF830 PEX12 LIG3 SLFN5
GH17J036084 Enhancer 0.7 ENCODE dbSUPER 4.8 +587.2 587194 2.3 CEBPB RXRA SPI1 POLR2A HNF4A RAD21 ZSCAN4 GABPA SP1 ZNF335 CCL4 TAF5LP1 CCL3 lnc-CCL3-1 ENSG00000277089 CCL3-AS1 CCL18
GH17J036095 Enhancer 0.5 Ensembl 5.6 +597.6 597647 2.6 SPI1 IKZF1 ZNF768 ZFP69B ZNF366 ZNF512 IKZF2 PRDM1 piR-61945-203 CCL15 CCL18 CCL4 TAF5LP1 SLFN12L CCL3 NONHSAG021581.2 ENSG00000277089
GH17J035548 Enhancer 0.2 Ensembl 6.5 +50.6 50647 1 SNORD7 PEX12 C17orf50 MMP28 AP2B1 TAF5LP1 CCT6B GAS2L2 piR-41689-007 ENSG00000267035
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TAF5LP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TAF5LP1 Gene

Latest Assembly
chr17:35,498,054-35,499,177
(GRCh38/hg38)
Size:
1,124 bases
Orientation:
Plus strand

Previous Assembly
chr17:33,825,073-33,826,196
(GRCh37/hg19 by Entrez Gene)
Size:
1,124 bases
Orientation:
Plus strand

chr17:33,825,237-33,826,194
(GRCh37/hg19 by Ensembl)
Size:
958 bases
Orientation:
Plus strand

Genomic View for TAF5LP1 Gene

Genes around TAF5LP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TAF5LP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TAF5LP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAF5LP1 Gene

Proteins for TAF5LP1 Gene

Post-translational modifications for TAF5LP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAF5LP1 Gene

Domains & Families for TAF5LP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TAF5LP1 Gene

Function for TAF5LP1 Gene

Phenotypes From GWAS Catalog for TAF5LP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TAF5LP1 Gene

Localization for TAF5LP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TAF5LP1 Gene

Pathways & Interactions for TAF5LP1 Gene

PathCards logo

SuperPathways for TAF5LP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TAF5LP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TAF5LP1 Gene

Drugs & Compounds for TAF5LP1 Gene

No Compound Related Data Available

Transcripts for TAF5LP1 Gene

mRNA/cDNA for TAF5LP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TAF5LP1 Gene

No ASD Table

Relevant External Links for TAF5LP1 Gene

GeneLoc Exon Structure for
TAF5LP1

Expression for TAF5LP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TAF5LP1 Gene

mRNA differential expression in normal tissues according to GTEx for TAF5LP1 Gene

This gene is overexpressed in Whole Blood (x14.8) and Spleen (x7.7).
genes like me logo Genes that share expression patterns with TAF5LP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TAF5LP1 Gene

Orthologs for TAF5LP1 Gene

Evolution for TAF5LP1 Gene

ENSEMBL:
Gene Tree for TAF5LP1 (if available)
TreeFam:
Gene Tree for TAF5LP1 (if available)
Alliance of Genome Resources:
Additional Orthologs for TAF5LP1

No data available for Orthologs for TAF5LP1 Gene

Paralogs for TAF5LP1 Gene

No data available for Paralogs for TAF5LP1 Gene

Variants for TAF5LP1 Gene

Additional Variant Information for TAF5LP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TAF5LP1
Leiden Open Variation Database (LOVD)
TAF5LP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TAF5LP1 Gene

Disorders for TAF5LP1 Gene

No disorders were found for TAF5LP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TAF5LP1 Gene

Publications for TAF5LP1 Gene

No publications were found for TAF5LP1 Gene.

No data available for Mastermind for TAF5LP1 Gene

Products for TAF5LP1 Gene

Sources for TAF5LP1 Gene