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Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory sign... See more...
Aliases for TAF5 Gene
Aliases for TAF5 Gene
- TATA-Box Binding Protein Associated Factor 5 2 3 5
- TAFII100 2 3 4
- TAF5 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 100kDa 2 3
- TATA Box Binding Protein (TBP)-Associated Factor, RNA Polymerase II, D, 100kD 2 3
- Transcription Initiation Factor TFIID 100 KDa Subunit 3 4
- Transcription Initiation Factor TFIID Subunit 5 3 4
External Ids for TAF5 Gene
- HGNC: 11539
- Entrez Gene: 6877
- Ensembl: ENSG00000148835
- OMIM: 601787
- UniProtKB: Q15542
Previous HGNC Symbols for TAF5 Gene
- TAF2D
Previous GeneCards Identifiers for TAF5 Gene
- GC10P104020
- GC10P104361
- GC10P105258
- GC10P104792
- GC10P105117
- GC10P098758
Summaries for TAF5 Gene
-
Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome-like core in the TFIID complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]
GeneCards Summary for TAF5 Gene
TAF5 (TATA-Box Binding Protein Associated Factor 5) is a Protein Coding gene. Among its related pathways are RNA Polymerase II Transcription Initiation And Promoter Clearance and Regulation of TP53 Activity. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and transcription regulatory region DNA binding. An important paralog of this gene is TAF5L.
UniProtKB/Swiss-Prot Summary for TAF5 Gene
-
TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.
Additional gene information for TAF5 Gene
- HGNC(11539)
- Entrez Gene(6877)
- Ensembl(ENSG00000148835)
- OMIM(601787)
- UniProtKB(Q15542)
- Open Targets Platform(ENSG00000148835)
- Search for TAF5 at DataMed
- Search for TAF5 at HumanCyc
No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TAF5 Gene
Genomics for TAF5 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for TAF5 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around TAF5 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for TAF5
- Top Transcription factor binding sites by QIAGEN in the TAF5 gene promoter:
-
- AML1a
- c-Myb
- HOXA9
- HOXA9B
- Meis-1
- Meis-1b
- Pax-5
- SEF-1 (1)
- YY1
Genomic Locations for TAF5 Gene
Genomic Locations for TAF5 Gene
- chr10:103,367,976-103,389,065
- (GRCh38/hg38)
- Size:
- 21,090 bases
- Orientation:
- Plus strand
- chr10:105,127,724-105,148,822
- (GRCh37/hg19)
- Size:
- 21,099 bases
- Orientation:
- Plus strand
Genomic View for TAF5 Gene
Genes around TAF5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 10q24.33 by HGNC
- 10q24.33 by Entrez Gene
- 10q24.33 by Ensembl
TAF5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for TAF5 Gene
Proteins for TAF5 Gene
-
Protein details for TAF5 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q15542-TAF5_HUMAN
- Recommended name:
- Transcription initiation factor TFIID subunit 5
- Protein Accession:
- Q15542
- A8K5B4
- B2RMR0
- B7ZKJ6
- Q53EM4
- Q5SYD5
- Q86UZ7
- Q9Y4K5
Protein attributes for TAF5 Gene
- Size:
- 800 amino acids
- Molecular mass:
- 86830 Da
- Quaternary structure:
-
- Homodimer. TFIID and PCAF are composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). TBP is not part of TFTC. Component of the TFTC-HAT complex, at least composed of TAF5L, TAF6L, TADA3L, SUPT3H/SPT3, TAF2/TAFII150, TAF4/TAFII135, TAF5/TAFII100, GCN5L2/GCN5, TAF10 and TRRAP.
- (Microbial infection) Interacts with SV40 Large T antigen.
- SequenceCaution:
-
- Sequence=AAC50902.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAD97335.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Three dimensional structures from OCA and Proteopedia for TAF5 Gene
Protein Expression for TAF5 Gene
Post-translational modifications for TAF5 Gene
Other Protein References for TAF5 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- G Biosciences Immunotag™ TAF5 Antibody
-
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-
Abcam antibodies for TAF5
- Invitrogen Antibodies for TAF5 (AFLGC-TAF5)
-
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Protein Products
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- antibodies-online: Show 3 available TAF5 Proteins ranked by validation data
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-
Quality Products:
-
Abcam proteins for TAF5
No data available for DME Specific Peptides for TAF5 Gene
Domains & Families for TAF5 Gene
Gene Families for TAF5 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Plasma proteins
- Predicted intracellular proteins
Protein Domains for TAF5 Gene
- InterPro:
- Blocks:
-
- G-protein beta WD-40 repeat signature
- Lissencephaly type-1-like homology motif
- WD40 associated region in TFIID subunit
- ProtoNet:
Suggested Antigen Peptide Sequences for TAF5 Gene
- GenScript: Design optimal peptide antigens:
-
- Transcription initiation factor TFIID 100 kDa subunit (TAF5_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q15542UniProtKB/Swiss-Prot:
TAF5_HUMAN :- Distinct domains of TAF5/TAFII100 are required for functional interaction with transcription factor TFIIFB (RAP30) and incorporation into the TFIID complex.
- Belongs to the WD repeat TAF5 family.
- Domain:
-
- Distinct domains of TAF5/TAFII100 are required for functional interaction with transcription factor TFIIFB (RAP30) and incorporation into the TFIID complex.
- Family:
-
- Belongs to the WD repeat TAF5 family.
Function for TAF5 Gene
Molecular function for TAF5 Gene
- UniProtKB/Swiss-Prot Function:
- TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.
Phenotypes From GWAS Catalog for TAF5 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | IDA | 17996705 |
| GO:0003713 | transcription coactivator activity | IBA | 21873635 |
| GO:0005515 | protein binding | IPI | 9045704 |
| GO:0016251 | RNA polymerase II general transcription initiation factor activity | IMP | 9045704 |
| GO:0042802 | identical protein binding | IPI | 17227857 |
Phenotypes for TAF5 Gene
- GenomeRNAi human phenotypes for TAF5:
-
- Decreased hepcidin::fluc mRNA expression
- Increased vaccinia virus (VACV) infection
- no effect
- Decreased viability
- Decreased vaccinia virus (VACV) infection
- shRNA abundance <= 50%
- Synthetic lethal with Ras
- Decreased endosome-nucleus distance (endosomes clustered in the perinuclear region)
- Inconclusive
- Increased S DNA content
- Increased G1 length
- Increased S length
- Increased Sindbis virus (SINV) infection
- Increased G2 length
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
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miRNA for TAF5 Gene
- miRTarBase miRNAs that target TAF5
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Clone Products
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- Sino Biological Human cDNA Clone for TAF5
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TAF5 Gene
Localization for TAF5 Gene
Subcellular locations from UniProtKB/Swiss-Prot for TAF5 Gene
- Nucleus.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytoskeleton | 4 |
| cytosol | 2 |
| mitochondrion | 1 |
- Nucleoplasm (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000790 | nuclear chromatin | IDA | 24289924 |
| GO:0005634 | nucleus | IEA,IDA | 15637059 |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005669 | transcription factor TFIID complex | IDA | 9045704 |
| GO:0005730 | NOT nucleolus | IDA | 15637059 |
Pathways & Interactions for TAF5 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | RNA Polymerase II Transcription Initiation And Promoter Clearance |
Assembly of RNA Polymerase-II Initiation Complex
.91
Transcription of mRNA
.91
|
Protein Acetylation and Deacetylation
.51
Crosstalk Between CARM1 and ESRs
.39
Transcription Ligand-Dependent Transcription of Retinoid-Target genes
.33
|
| 2 | HIV Life Cycle |
.91
.65
|
.45
|
| 3 | HIV Transcription Elongation | ||
| 4 | Regulation of TP53 Activity | ||
| 5 | Gene Expression |
.48
|
|
Pathways by source for TAF5 Gene
2 BioSystems pathways for TAF5 Gene
20 Reactome pathways for TAF5 Gene
1 KEGG pathway for TAF5 Gene
1 GeneGo (Thomson Reuters) pathway for TAF5 Gene
- Transcription Ligand-Dependent Transcription of Retinoid-Target genes
7 Qiagen pathways for TAF5 Gene
- Assembly of RNA Polymerase-II Initiation Complex
- Crosstalk Between CARM1 and ESRs
- Estrogen Pathway
- Glucocorticoid Receptor Signaling
- Nuclear Receptor Activation by Vitamin-A
Interacting Proteins for TAF5 Gene
Selected Interacting proteins:
Q15542-TAF5_HUMAN
ENSP00000358854
for TAF5 Gene via
UniProtKB
MINT
STRING
IID
GPS-Prot Interaction Network for TAF5
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006352 | DNA-templated transcription, initiation | IDA | 9603525 |
| GO:0006366 | transcription by RNA polymerase II | TAS | -- |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | TAS | -- |
| GO:0016032 | viral process | IEA | -- |
| GO:0042795 | snRNA transcription by RNA polymerase II | TAS | -- |
No data available for SIGNOR curated interactions for TAF5 Gene
Transcripts for TAF5 Gene
mRNA/cDNA for TAF5 Gene
- 2 REFSEQ mRNAs :
- 11 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000369839 3259 nts (view in UCSC)
CRISPR Products
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-
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-
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miRNA Products
Inhibitory RNA Products
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Clone Products
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- Sino Biological Human cDNA Clone for TAF5
- Addgene plasmids for TAF5
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for TAF5
Relevant External Links for TAF5 Gene
- GeneLoc Exon Structure for
- TAF5
Expression for TAF5 Gene
This gene is overexpressed in Liver, secretome (18.3) and Lymph node (11.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TAF5 Gene
- Elite partner
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TAF5
SOURCE GeneReport for Unigene cluster for TAF5 Gene:
Hs.96103Evidence on tissue expression from TISSUES for TAF5 Gene
- Nervous system(4.4)
- Skin(2.1)
- Kidney(2.1)
Primer Products
-
OriGene qPCR primer pairs for TAF5
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TAF5 Gene
Orthologs for TAF5 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | TAF5 30 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | -- 31 |
|
OneToMany | |
| -- 31 |
|
OneToMany | |||
| Dog (Canis familiaris) |
Mammalia | TAF5 30 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | TAF5 30 31 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | Taf5 30 |
|
||
| Mouse (Mus musculus) |
Mammalia | Taf5 30 17 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | TAF5 31 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | TAF5 30 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | TAF5 31 |
|
OneToOne | |
| Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | taf5 30 |
|
||
| Zebrafish (Danio rerio) |
Actinopterygii | taf5 30 31 |
|
OneToOne | |
| wufc38g05 30 |
|
||||
| Rainbow Trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.13815 30 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP011678 30 |
|
||
| Fruit Fly (Drosophila melanogaster) |
Insecta | Taf5 30 31 32 |
|
OneToOne | |
| CG4448 32 |
|
|
|||
| can 32 |
|
|
|||
| Worm (Caenorhabditis elegans) |
Secernentea | taf-5 30 |
|
||
| K. Lactis Yeast (Kluyveromyces lactis) |
Saccharomycetes | KLLA0E23453g 30 |
|
||
| A. gosspyii yeast (Eremothecium gossypii) |
Saccharomycetes | AGOS_AEL246C 30 |
|
||
| Baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | TAF5 30 31 33 |
|
OneToMany | |
| Thale Cress (Arabidopsis thaliana) |
eudicotyledons | TAF5 30 |
|
||
| Rice (Oryza sativa) |
Liliopsida | Os06g0649500 30 |
|
||
| Wheat (Triticum aestivum) |
Liliopsida | Ta.7323 30 |
|
||
| Sea Squirt (Ciona savignyi) |
Ascidiacea | CSA.2112 31 |
|
OneToOne | |
| Fission Yeast (Schizosaccharomyces pombe) |
Schizosaccharomycetes | taf5 30 |
|
- Species where no ortholog for TAF5 was found in the sources mined by GeneCards:
-
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
Evolution for TAF5 Gene
- ENSEMBL:
- Gene Tree for TAF5 (if available)
- TreeFam:
- Gene Tree for TAF5 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for TAF5: view image
Paralogs for TAF5 Gene
Variants for TAF5 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for TAF5 Gene
| SNP ID | Clinical significance and condition | Chr 10 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 708795 | Benign: not provided | 103,381,735(+) | G/C | SYNONYMOUS_VARIANT | |
| 818167 | Not Provided: not provided | 103,379,720(+) | G/A | MISSENSE_VARIANT | |
| rs10883859 | - | p.Ser130Ala |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv965n100 | CNV | gain | 25217958 |
| dgv966n100 | CNV | gain | 25217958 |
Residual Variation Intolerance Score:
19% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
8.97;
87.32% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for TAF5 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TAF5
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TAF5 Gene
Disorders for TAF5 Gene
Additional Disease Information for TAF5
No disorders were found for TAF5 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TAF5 Gene
Publications for TAF5 Gene
- Molecular cloning and analysis of two subunits of the human TFIID complex: hTAFII130 and hTAFII100. (PMID: 8942982) Tanese N … Admon A (Proceedings of the National Academy of Sciences of the United States of America 1996) 2 3 4
- Structural analysis and dimerization potential of the human TAF5 subunit of TFIID. (PMID: 17227857) Bhattacharya S … Jacobson RH (Proceedings of the National Academy of Sciences of the United States of America 2007) 3 4
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
- Novel subunits of the TATA binding protein free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one-dimensional gel electrophoresis. (PMID: 12601814) Cavusoglu N … Van Dorsselaer A (Proteomics 2003) 3 4
- Identification of TATA-binding protein-free TAFII-containing complex subunits suggests a role in nucleosome acetylation and signal transduction. (PMID: 10373431) Brand M … Tora L (The Journal of biological chemistry 1999) 3 4
ExternalLinks
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Sources for TAF5 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
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