Aliases for TAF1A-AS1 Gene

Data sources for TAF1A-AS1 Gene:

Subcategory (RNA class) for TAF1A-AS1 Gene

lncRNA

Aliases for TAF1A-AS1 Gene

External Ids for TAF1A-AS1 Gene

Previous GeneCards Identifiers for TAF1A-AS1 Gene

  • GC01P222589

Summaries for TAF1A-AS1 Gene

GeneCards Summary for TAF1A-AS1 Gene

TAF1A-AS1 (TAF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for TAF1A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for TAF1A-AS1 Gene

Genomics for TAF1A-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for TAF1A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J222588 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 264.5 +73.9 73906 2.8 TBP MXD4 NR2C1 MNT IKZF1 SMAD5 ETS1 MBD2 ZNF217 POLR2A TAF1A TAF1A-AS1 CICP13 ENSG00000272750 HHIPL2 lnc-TAF1A-1 lnc-HHIPL2-5
GH01J222616 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 19.3 +102.2 102181 3.5 TBP ZBTB10 SP1 IKZF1 SMAD5 POLR2A NONO ZIC2 ZNF610 SIN3A MIA3 TAF1A TAF1A-AS1 ENSG00000272750 LOC107985318
GH01J222581 Enhancer 0.8 ENCODE 13.7 +66.5 66525 2 BCL11A ZEB1 CEBPB EP300 PRDM1 EBF1 THRB STAT3 BCL11B PRDM6 TAF1A MIA3 HHIPL2 CICP13 TAF1A-AS1 ENSG00000272750 lnc-HHIPL2-5
GH01J222600 Enhancer 0.7 Ensembl ENCODE 14.3 +85.0 85000 1.4 JUND NFE2 NR2F6 GABPA FOS NFE2L2 KLF4 TAF1A-AS1 HHIPL2 LOC107985318 TAF1A MIA3
GH01J222552 Enhancer 0.3 Ensembl 10.3 +36.4 36407 0.2 CEBPB TAF1A TAF1A-AS1 HHIPL2 HSALNG0010846
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TAF1A-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for TAF1A-AS1 Gene

Latest Assembly
chr1:222,515,894-222,602,955
(GRCh38/hg38)
Size:
87,062 bases
Orientation:
Plus strand

Previous Assembly
chr1:222,763,262-222,765,975
(GRCh37/hg19 by Entrez Gene)
Size:
2,714 bases
Orientation:
Plus strand

chr1:222,763,167-222,766,374
(GRCh37/hg19 by Ensembl)
Size:
3,208 bases
Orientation:
Plus strand

Genomic View for TAF1A-AS1 Gene

Genes around TAF1A-AS1 on UCSC Golden Path with GeneCards custom track
TAF1A-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
TAF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TAF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAF1A-AS1 Gene

Proteins for TAF1A-AS1 Gene

Post-translational modifications for TAF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAF1A-AS1 Gene

Domains & Families for TAF1A-AS1 Gene

Gene Families for TAF1A-AS1 Gene

genes like me logo Genes that share domains with TAF1A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for TAF1A-AS1 Gene

Function for TAF1A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TAF1A-AS1 Gene

Localization for TAF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TAF1A-AS1 Gene

Pathways & Interactions for TAF1A-AS1 Gene

PathCards logo

SuperPathways for TAF1A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TAF1A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for TAF1A-AS1 Gene

Drugs & Compounds for TAF1A-AS1 Gene

No Compound Related Data Available

Transcripts for TAF1A-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for TAF1A-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002AE3AA_9606 lncRNA 753 4

Ensembl: ENST00000427540 (view in UCSC) ,

LncBook: HSALNT0022547,

LNCipedia: TAF1A-AS1:3,

NONCODE: NONHSAT009689.2,

URS00001B085A_9606 lncRNA 461 4

Ensembl: ENST00000441835 (view in UCSC) ,

LncBook: HSALNT0022543,

LNCipedia: TAF1A-AS1:1,

NONCODE: NONHSAT009688.2,

URS000056D554_9606 lncRNA 1313 3

Ensembl: ENST00000413074 (view in UCSC) ,

LncBook: HSALNT0022549, HSALNT0022551, HSALNT0022553,

LNCipedia: TAF1A-AS1:5, TAF1A-AS1:9,

URS0000759F76_9606 lncRNA 917 3

RefSeq: NR_110614,

LncBook: HSALNT0022548,

LNCipedia: TAF1A-AS1:4,

URS000075D6B5_9606 lncRNA 664 3

RefSeq: NR_110613,

LncBook: HSALNT0022545,

LNCipedia: TAF1A-AS1:2,

TAF1A-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for TAF1A-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for TAF1A-AS1 Gene

No ASD Table

Relevant External Links for TAF1A-AS1 Gene

GeneLoc Exon Structure for
TAF1A-AS1

Expression for TAF1A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TAF1A-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for TAF1A-AS1

genes like me logo Genes that share expression patterns with TAF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TAF1A-AS1 Gene

Orthologs for TAF1A-AS1 Gene

Evolution for TAF1A-AS1 Gene

ENSEMBL:
Gene Tree for TAF1A-AS1 (if available)
TreeFam:
Gene Tree for TAF1A-AS1 (if available)

No data available for Orthologs for TAF1A-AS1 Gene

Paralogs for TAF1A-AS1 Gene

No data available for Paralogs for TAF1A-AS1 Gene

Variants for TAF1A-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for TAF1A-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for TAF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TAF1A-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TAF1A-AS1 Gene

Disorders for TAF1A-AS1 Gene

Additional Disease Information for TAF1A-AS1

No disorders were found for TAF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TAF1A-AS1 Gene

Publications for TAF1A-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for TAF1A-AS1 Gene

Products for TAF1A-AS1 Gene

Sources for TAF1A-AS1 Gene