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Aliases for SZT2-AS1 Gene

Subcategory (RNA class) for SZT2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SZT2-AS1 Gene

  • SZT2 Antisense RNA 1 2 3 5
  • SZT2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SZT2-AS1 Gene

Previous GeneCards Identifiers for SZT2-AS1 Gene

  • GC00U933393
  • GC01M043914

Summaries for SZT2-AS1 Gene

GeneCards Summary for SZT2-AS1 Gene

SZT2-AS1 (SZT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SZT2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SZT2-AS1 Gene

Genomics for SZT2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SZT2-AS1 Gene

Promoters and enhancers for SZT2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I043705 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 -259.0 -258951 3.8 HDGF FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 KDM4A-AS1 ST3GAL3 SZT2 DMAP1 P3H1 KDM4A HYI MED8 ARTN ZNF691
GH01I043404 Enhancer 0.9 ENCODE 11 +43.2 43235 1.1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 ATF7 NCOA1 SNIP1 MED8 SZT2 PPIH HYI P3H1 ENSG00000229431 ELOVL1 CDC20 LOC105378687 KDM4A-AS1
GH01I043414 Enhancer 0.8 ENCODE 11.2 +33.8 33819 0.1 HDAC1 MEIS2 CTCF RB1 JUN RAD21 RELA FOSL1 ZNF335 CC2D1A ELOVL1 LOC105378687 CDC20 SZT2 SZT2-AS1 HYI-AS1 HYI PTPRF ENSG00000229431 MED8
GH01I043239 Enhancer 0.8 Ensembl 11 +210.1 210144 0.2 ELF3 SIN3A THRB ZNF48 RAD21 RARA YY1 SLC30A9 ARID2 ZNF143 TMEM125 ELOVL1 CDC20 LOC105378687 ENSG00000229431 MED8 SZT2 HYI HYI-AS1 SZT2-AS1
GH01I043240 Enhancer 0.6 ENCODE 11 +209.1 209059 1.1 HDGF PKNOX1 EBF1 ELF1 DPF2 IRF4 BCL11A IKZF1 NBN ZFP36 TMEM125 ELOVL1 CDC20 LOC105378687 MPL ENSG00000229431 MED8 SZT2 SZT2-AS1 HYI
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SZT2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SZT2-AS1 Gene

Genomic Locations for SZT2-AS1 Gene
chr1:43,447,776-43,448,644
(GRCh38/hg38)
Size:
869 bases
Orientation:
Minus strand
chr1:43,913,447-43,914,315
(GRCh37/hg19)

Genomic View for SZT2-AS1 Gene

Genes around SZT2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SZT2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SZT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SZT2-AS1 Gene

Proteins for SZT2-AS1 Gene

Post-translational modifications for SZT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SZT2-AS1 Gene

Domains & Families for SZT2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SZT2-AS1 Gene

Function for SZT2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SZT2-AS1 Gene

Localization for SZT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SZT2-AS1 Gene

Pathways & Interactions for SZT2-AS1 Gene

SuperPathways for SZT2-AS1 Gene

No Data Available

Interacting Proteins for SZT2-AS1 Gene

Gene Ontology (GO) - Biological Process for SZT2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SZT2-AS1 Gene

Drugs & Compounds for SZT2-AS1 Gene

No Compound Related Data Available

Transcripts for SZT2-AS1 Gene

mRNA/cDNA for SZT2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SZT2-AS1 Gene

No ASD Table

Relevant External Links for SZT2-AS1 Gene

GeneLoc Exon Structure for
SZT2-AS1
ECgene alternative splicing isoforms for
SZT2-AS1

Expression for SZT2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SZT2-AS1 Gene

genes like me logo Genes that share expression patterns with SZT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SZT2-AS1 Gene

Orthologs for SZT2-AS1 Gene

Evolution for SZT2-AS1 Gene

ENSEMBL:
Gene Tree for SZT2-AS1 (if available)
TreeFam:
Gene Tree for SZT2-AS1 (if available)

No data available for Orthologs for SZT2-AS1 Gene

Paralogs for SZT2-AS1 Gene

No data available for Paralogs for SZT2-AS1 Gene

Variants for SZT2-AS1 Gene

Additional Variant Information for SZT2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SZT2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SZT2-AS1 Gene

Disorders for SZT2-AS1 Gene

Additional Disease Information for SZT2-AS1

No disorders were found for SZT2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SZT2-AS1 Gene

Publications for SZT2-AS1 Gene

No publications were found for SZT2-AS1 Gene.

Products for SZT2-AS1 Gene

Sources for SZT2-AS1 Gene

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