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Aliases for SYP-AS1 Gene

Subcategory (RNA class) for SYP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SYP-AS1 Gene

  • SYP Antisense RNA 1 2 3 5
  • SYP Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for SYP-AS1 Gene

Previous GeneCards Identifiers for SYP-AS1 Gene

  • GC00U933135
  • GC0XP049080
  • GC0XP049267
  • GC0XP049270
  • GC0XP049291
  • GC0XP049272
  • GC0XP049275
  • GC0XP049277
  • GC0XP049280
  • GC0XP049282
  • GC0XP049284
  • GC0XP049286
  • GC0XP049289

Summaries for SYP-AS1 Gene

GeneCards Summary for SYP-AS1 Gene

SYP-AS1 (SYP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SYP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYP-AS1 Gene

Genomics for SYP-AS1 Gene

GeneHancer (GH) Regulatory Elements for SYP-AS1 Gene

Promoters and enhancers for SYP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ049198 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.7 719 2.9 SP1 ZFX MNT ZNF148 NKRF ZNF121 POLR2A GTF2F1 ZNF687 AHR SYP SYP-AS1 FTSJ1 ENSG00000204620 ENSG00000270012 CACNA1F
GH0XJ049188 Promoter/Enhancer 1.5 Ensembl ENCODE 0.4 -8.3 -8268 4.5 ZFX SP1 NKRF ZNF121 POLR2A GTF2F1 FOS SP7 ELF1 CREM PRICKLE3 CACNA1F PLP2 ENSG00000204620 WDR45 SYP SYP-AS1
GH0XJ049192 Enhancer 0.6 ENCODE 0.4 -5.9 -5930 0.2 CTCF SP7 RAD21 ZNF143 REST TRIM22 SMC3 ZNF654 ZNF660 PRICKLE3 SYP SYP-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SYP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SYP-AS1 Gene

Genomic Locations for SYP-AS1 Gene
chrX:49,198,839-49,202,454
(GRCh38/hg38)
Size:
3,616 bases
Orientation:
Plus strand
chrX:49,055,425-49,058,913
(GRCh37/hg19)
Size:
3,489 bases
Orientation:
Plus strand

Genomic View for SYP-AS1 Gene

Genes around SYP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYP-AS1 Gene

Proteins for SYP-AS1 Gene

Post-translational modifications for SYP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYP-AS1 Gene

Domains & Families for SYP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYP-AS1 Gene

Function for SYP-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYP-AS1 Gene

Localization for SYP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SYP-AS1 Gene

Pathways & Interactions for SYP-AS1 Gene

PathCards logo

SuperPathways for SYP-AS1 Gene

No Data Available

Interacting Proteins for SYP-AS1 Gene

Gene Ontology (GO) - Biological Process for SYP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYP-AS1 Gene

Drugs & Compounds for SYP-AS1 Gene

No Compound Related Data Available

Transcripts for SYP-AS1 Gene

mRNA/cDNA for SYP-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SYP-AS1 Gene

No ASD Table

Relevant External Links for SYP-AS1 Gene

GeneLoc Exon Structure for
SYP-AS1
ECgene alternative splicing isoforms for
SYP-AS1

Expression for SYP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SYP-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.1), Brain - Anterior cingulate cortex (BA24) (x7.3), Brain - Cortex (x5.3), Brain - Hypothalamus (x4.3), and Brain - Cerebellar Hemisphere (x4.2).
genes like me logo Genes that share expression patterns with SYP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYP-AS1 Gene

Orthologs for SYP-AS1 Gene

Evolution for SYP-AS1 Gene

ENSEMBL:
Gene Tree for SYP-AS1 (if available)
TreeFam:
Gene Tree for SYP-AS1 (if available)

No data available for Orthologs for SYP-AS1 Gene

Paralogs for SYP-AS1 Gene

No data available for Paralogs for SYP-AS1 Gene

Variants for SYP-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYP-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1057515927 uncertain-significance, Non-syndromic X-linked intellectual disability 49,200,194(+) G/A/T intron_variant
rs781815856 likely-benign, Non-syndromic X-linked intellectual disability 49,199,016(+) C/T non_coding_transcript_variant
rs200470034 uncertain-significance, not specified 49,200,182(+) A/C/G/T intron_variant
rs1000851398 -- 49,200,717(+) T/A intron_variant
rs1000905120 -- 49,200,346(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SYP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv32909 CNV gain+loss 17666407
nsv205 OTHER inversion 15895083
nsv528292 CNV gain 19592680
nsv7442 OTHER inversion 18451855

Additional Variant Information for SYP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYP-AS1 Gene

Disorders for SYP-AS1 Gene

Additional Disease Information for SYP-AS1

No disorders were found for SYP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYP-AS1 Gene

Publications for SYP-AS1 Gene

No publications were found for SYP-AS1 Gene.

Products for SYP-AS1 Gene

Sources for SYP-AS1 Gene

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