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This gene encodes an integral membrane protein. The gene belongs to the synaptogyrin gene family. Like other members of the family the protein contains four transmembrane regions. The exact function of this protein is unclear. [provided by RefSeq, Jul 2008] See more...
Aliases for SYNGR4 Gene
Aliases for SYNGR4 Gene
External Ids for SYNGR4 Gene
- HGNC: 11502
- Entrez Gene: 23546
- Ensembl: ENSG00000105467
- OMIM: 608373
- UniProtKB: O95473
Previous GeneCards Identifiers for SYNGR4 Gene
- GC19P049513
- GC19P049235
- GC19P053543
- GC19P053559
- GC19P048867
- GC19P045248
Summaries for SYNGR4 Gene
-
This gene encodes an integral membrane protein. The gene belongs to the synaptogyrin gene family. Like other members of the family the protein contains four transmembrane regions. The exact function of this protein is unclear. [provided by RefSeq, Jul 2008]
GeneCards Summary for SYNGR4 Gene
SYNGR4 (Synaptogyrin 4) is a Protein Coding gene. An important paralog of this gene is SYNGR3.
Additional gene information for SYNGR4 Gene
- HGNC(11502)
- Entrez Gene(23546)
- Ensembl(ENSG00000105467)
- OMIM(608373)
- UniProtKB(O95473)
- Open Targets Platform(ENSG00000105467)
- Search for SYNGR4 at DataMed
- Search for SYNGR4 at HumanCyc
No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SYNGR4 Gene
Genomics for SYNGR4 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SYNGR4 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SYNGR4 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for SYNGR4
- Top Transcription factor binding sites by QIAGEN in the SYNGR4 gene promoter:
-
- Arnt
- Meis-1
- Meis-1a
- Meis-1b
- NF-1
- p53
- SRF
- SRF (504 AA)
- YY1
- ZID
Genomic Locations for SYNGR4 Gene
Genomic Locations for SYNGR4 Gene
- chr19:48,364,267-48,376,377
- (GRCh38/hg38)
- Size:
- 12,111 bases
- Orientation:
- Plus strand
- chr19:48,867,651-48,879,634
- (GRCh37/hg19)
- Size:
- 11,984 bases
- Orientation:
- Plus strand
Genomic View for SYNGR4 Gene
Genes around SYNGR4 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by HGNC
- 19q13.33 by Entrez Gene
- 19q13.33 by Ensembl
SYNGR4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SYNGR4 Gene
Proteins for SYNGR4 Gene
-
Protein details for SYNGR4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O95473-SNG4_HUMAN
- Recommended name:
- Synaptogyrin-4
- Protein Accession:
- O95473
- Q3KP58
Protein attributes for SYNGR4 Gene
- Size:
- 234 amino acids
- Molecular mass:
- 25820 Da
- Quaternary structure:
- No Data Available
Protein Expression for SYNGR4 Gene
Post-translational modifications for SYNGR4 Gene
Other Protein References for SYNGR4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for SYNGR4
-
Abcam antibodies for SYNGR4
- Invitrogen Antibodies for SYNGR4 (AFLGC-Syngr4)
-
Boster Bio Antibodies for SYNGR4
-
Custom Antibody ServicesProSci Antibodies for SYNGR4
-
Santa Cruz Biotechnology (SCBT) Antibodies for SYNGR4
Protein Products
-
OriGene Purified Proteins for SYNGR4
- Search Origene for MassSpec and Protein Over-expression Lysates for SYNGR4
- Origene Custom Protein Services for SYNGR4
-
Abcam proteins for SYNGR4
Assay Products
-
Signalway ELISA kits for SYNGR4
No data available for DME Specific Peptides for SYNGR4 Gene
Domains & Families for SYNGR4 Gene
Gene Families for SYNGR4 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Predicted membrane proteins
Protein Domains for SYNGR4 Gene
- InterPro:
- Blocks:
-
- Marvel
- ProtoNet:
Suggested Antigen Peptide Sequences for SYNGR4 Gene
- GenScript: Design optimal peptide antigens:
-
- Synaptogyrin-4 (SNG4_HUMAN)
Graphical View of Domain Structure for InterPro Entry
O95473- Family:
-
- Belongs to the synaptogyrin family.
Function for SYNGR4 Gene
Phenotypes From GWAS Catalog for SYNGR4 Gene
Phenotypes for SYNGR4 Gene
- MGI mutant phenotypes for SYNGR4:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for SYNGR4:
Animal Models for SYNGR4 Gene
- MGI Knock Outs for SYNGR4:
-
- Syngr4 Syngr4<tm1Osb>
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SYNGR4 - Select products 50% OFF >
- * SYNGR4 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for SYNGR4
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for SYNGR4
-
Santa Cruz Biotechnology (SCBT) CRISPR for SYNGR4
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for SYNGR4
- Browse OriGene Inhibitory RNA Products For SYNGR4
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SYNGR4
Clone Products
- Applied Biological Materials (abm): Clones for SYNGR4 - Select products 50% OFF >
- * SYNGR4 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for SYNGR4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for SYNGR4
Cell Line Products
-
Horizon Cell Lines for SYNGR4
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for SYNGR4 Gene
Localization for SYNGR4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for SYNGR4 Gene
- Membrane. Multi-pass membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 3 |
| cytoskeleton | 1 |
- Golgi apparatus (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
| GO:0030672 | synaptic vesicle membrane | IBA | 21873635 |
| GO:0031594 | neuromuscular junction | IBA | 21873635 |
Pathways & Interactions for SYNGR4 Gene
Interacting Proteins for SYNGR4 Gene
GPS-Prot Interaction Network for SYNGR4
No data available for Pathways by source and SIGNOR curated interactions for SYNGR4 Gene
Transcripts for SYNGR4 Gene
mRNA/cDNA for SYNGR4 Gene
- 1 REFSEQ mRNAs :
- 5 NCBI additional mRNA sequence :
- 4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000344846 1042 nts (view in UCSC)
- ENST00000595322 533 nts (view in UCSC)
- ENST00000600863 365 nts (view in UCSC)
- ENST00000601610 859 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SYNGR4 - Select products 50% OFF >
- * SYNGR4 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for SYNGR4
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for SYNGR4
-
Santa Cruz Biotechnology (SCBT) CRISPR for SYNGR4
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for SYNGR4
- Browse OriGene Inhibitory RNA Products For SYNGR4
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SYNGR4
Clone Products
- Applied Biological Materials (abm): Clones for SYNGR4 - Select products 50% OFF >
- * SYNGR4 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for SYNGR4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for SYNGR4
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8a | · | 8b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | |||||||||||||||||||||
| SP2: | - | - | |||||||||||||||||||
| SP3: | - | - | - | ||||||||||||||||||
| SP4: | - | ||||||||||||||||||||
| SP5: | - | - | - | - |
Relevant External Links for SYNGR4 Gene
- GeneLoc Exon Structure for
- SYNGR4
Expression for SYNGR4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Skeletal Muscle (Muscoskeletal System)
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for SYNGR4 Gene
This gene is overexpressed in Testis (x41.5).
This gene is overexpressed in Ovary (36.0) and Testis (33.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SYNGR4 Gene
- Elite partner
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SYNGR4
SOURCE GeneReport for Unigene cluster for SYNGR4 Gene:
Hs.408333Primer Products
-
OriGene qPCR primer pairs for SYNGR4
-
OriGene qPCR primer pairs and template standards for SYNGR4
Gene Expression Assay Products
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYNGR4 Gene
Orthologs for SYNGR4 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SYNGR4 30 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SYNGR4 30 31 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | Syngr4 30 |
|
||
| Mouse (Mus musculus) |
Mammalia | Syngr4 30 17 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SYNGR4 30 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | SYNGR4 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | SYNGR4 31 |
|
OneToOne | |
| Fruit Fly (Drosophila melanogaster) |
Insecta | synaptogyrin 31 |
|
OneToMany | |
| Worm (Caenorhabditis elegans) |
Secernentea | sng-1 31 |
|
OneToMany | |
| Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 31 |
|
OneToMany |
- Species where no ortholog for SYNGR4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Zebrafish (Danio rerio)
Evolution for SYNGR4 Gene
- ENSEMBL:
- Gene Tree for SYNGR4 (if available)
- TreeFam:
- Gene Tree for SYNGR4 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for SYNGR4: view image
Paralogs for SYNGR4 Gene
Variants for SYNGR4 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SYNGR4 Gene
| SNP ID | Clinical significance and condition | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs919804 | - | p.Arg27Trp |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1793n106 | CNV | deletion | 24896259 |
| esv2718675 | CNV | deletion | 23290073 |
| esv34181 | CNV | loss | 18971310 |
| esv3644586 | CNV | loss | 21293372 |
| esv3893229 | CNV | loss | 25118596 |
| nsv833854 | CNV | loss | 17160897 |
| nsv9739 | CNV | gain+loss | 18304495 |
Residual Variation Intolerance Score:
79.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
4.12;
61.25% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for SYNGR4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SYNGR4
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SYNGR4 Gene
Disorders for SYNGR4 Gene
Additional Disease Information for SYNGR4
No disorders were found for SYNGR4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNGR4 Gene
Publications for SYNGR4 Gene
- A Novel GLP1 Receptor Interacting Protein ATP6ap2 Regulates Insulin Secretion in Pancreatic Beta Cells. (PMID: 26272612) Dai FF … Wheeler MB (The Journal of biological chemistry 2015) 3
- Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
- A transcript map of the chromosome 19q-arm glioma tumor suppressor region. (PMID: 10708517) Smith JS … Jenkins RB (Genomics 2000) 3
ExternalLinks
Products for SYNGR4 Gene
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for SYNGR4
- Search Origene for MassSpec and Protein Over-expression Lysates for SYNGR4
- Origene Custom Protein Services for SYNGR4
- Origene shrna, sirna, and RNAi products in human, mouse, rat for SYNGR4
- Browse OriGene Inhibitory RNA Products For SYNGR4
- OriGene qPCR primer pairs for SYNGR4
- OriGene qPCR primer pairs and template standards for SYNGR4
- OriGene CRISPR knockouts for SYNGR4
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SYNGR4
- Sino Biological Human cDNA Clone for SYNGR4
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
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- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Novus Biologicals Antibodies for SYNGR4
- Novus Biologicals proteins and lysates for SYNGR4
- Browse Antibodies
- Browse Peptides and Proteins
- Browse Lysates
- Browse ELISA Kits
- Abcam antibodies for SYNGR4
- Abcam proteins for SYNGR4
- Find your target
- Browse Primary Antibodies
- Browse Conjugated Primary Antibodies
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- Browse Matched Antibody Pairs
- Browse Proteins and Peptides
- Search Knockout (KO) Validated Antibodies
- Browse Monoclonal Antibodies
- Browse Recombinant Antibodies
- Invitrogen Antibodies for SYNGR4 (AFLGC-Syngr4)
- VectorBuilder Custom and pre-made DNA vectors for SYNGR4 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for SYNGR4 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for SYNGR4 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for SYNGR4 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for SYNGR4
- antibodies-online: Show 6 available SYNGR4 Antibodies ranked by validation data
- Compare Top SYNGR4 Antibodies
- antibodies-online: Search results for available SYNGR4 related products ranked by validation data
- antibodies-online: Search results for available SYNGR4 related products ranked by validation data
- Santa Cruz Biotechnology (SCBT) Antibodies for SYNGR4
- Search Santa Cruz Biotechnology (SCBT) for SYNGR4 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for SYNGR4
- Custom Antibody ServicesProSci Antibodies for SYNGR4
- Search for SYNGR4 Proteins at ProSci
- Horizon Cell Lines for SYNGR4
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for SYNGR4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for SYNGR4
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SYNGR4
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SYNGR4
- Boster Bio Antibodies for SYNGR4
- Browse Boster Bio ELISA Kits
- Signalway ELISA kits for SYNGR4
Sources for SYNGR4 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
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