Aliases for SYNGAP1-AS1 Gene

Data sources for SYNGAP1-AS1 Gene:

RNA type for SYNGAP1-AS1 Gene

lncRNA

Aliases for SYNGAP1-AS1 Gene

External Ids for SYNGAP1-AS1 Gene

Previous GeneCards Identifiers for SYNGAP1-AS1 Gene

  • GC06M033437
  • GC06M033445

Summaries for SYNGAP1-AS1 Gene

GeneCards Summary for SYNGAP1-AS1 Gene

SYNGAP1-AS1 (SYNGAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SYNGAP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SYNGAP1-AS1 Gene

Genomics for SYNGAP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SYNGAP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033452 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.3 289 3.2 SP1 NCOR1 MYC ZNF600 JUND ZNF580 KLF9 POLR2A ZNF223 ZSCAN16 HSALNG0049540 ZBTB9 SYNGAP1-AS1 DAXX VPS52 WDR46 RPL35P2 CUTA BRD2 RPS10
GH06J033449 Promoter 0.4 Ensembl 0.7 +3.9 3911 0.4 SPI1 CUTA HSALNG0049540 ZBTB9 SYNGAP1-AS1 piR-42491-189 SYNGAP1 RF00017-4943 RF00017-4944
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SYNGAP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SYNGAP1-AS1 Gene

Latest Assembly
chr6:33,436,835-33,454,512
(GRCh38/hg38)
Size:
17,678 bases
Orientation:
Minus strand

Genomic View for SYNGAP1-AS1 Gene

Genes around SYNGAP1-AS1 on UCSC Golden Path with GeneCards custom track
SYNGAP1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SYNGAP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNGAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SYNGAP1-AS1 Gene

Proteins for SYNGAP1-AS1 Gene

Post-translational modifications for SYNGAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNGAP1-AS1 Gene

Domains & Families for SYNGAP1-AS1 Gene

Gene Families for SYNGAP1-AS1 Gene

genes like me logo Genes that share domains with SYNGAP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SYNGAP1-AS1 Gene

Function for SYNGAP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNGAP1-AS1 Gene

Localization for SYNGAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SYNGAP1-AS1 Gene

Pathways & Interactions for SYNGAP1-AS1 Gene

PathCards logo

SuperPathways for SYNGAP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SYNGAP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SYNGAP1-AS1 Gene

Drugs & Compounds for SYNGAP1-AS1 Gene

No Compound Related Data Available

Transcripts for SYNGAP1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SYNGAP1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008118BF_9606 lncRNA 496 4

Ensembl: ENST00000630418 (view in UCSC) ,

LncBook: HSALNT0105200,

LNCipedia: SYNGAP1-AS1:8,

NONCODE: NONHSAT209012.1,

URS000077D9B1_9606 lncRNA 423 4

Ensembl: ENST00000614205 (view in UCSC) ,

LncBook: HSALNT0105205,

LNCipedia: SYNGAP1-AS1:10,

NONCODE: NONHSAT209014.1,

URS00008C106F_9606 lncRNA 269 3

LncBook: HSALNT0105202,

LNCipedia: SYNGAP1-AS1:13,

NONCODE: NONHSAT109001.2,

URS0000D5A768_9606 lncRNA 2757 2

LncBook: HSALNT0105203,

LNCipedia: SYNGAP1-AS1:9,

URS00009B2DF4_9606 lncRNA 218 2

LncBook: HSALNT0105201,

NONCODE: NONHSAT209013.1,

SYNGAP1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SYNGAP1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SYNGAP1-AS1 Gene

No ASD Table

Relevant External Links for SYNGAP1-AS1 Gene

GeneLoc Exon Structure for
SYNGAP1-AS1

Expression for SYNGAP1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYNGAP1-AS1 Gene

Orthologs for SYNGAP1-AS1 Gene

Evolution for SYNGAP1-AS1 Gene

ENSEMBL:
Gene Tree for SYNGAP1-AS1 (if available)
TreeFam:
Gene Tree for SYNGAP1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SYNGAP1-AS1

No data available for Orthologs for SYNGAP1-AS1 Gene

Paralogs for SYNGAP1-AS1 Gene

No data available for Paralogs for SYNGAP1-AS1 Gene

Variants for SYNGAP1-AS1 Gene

Additional Variant Information for SYNGAP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYNGAP1-AS1
Leiden Open Variation Database (LOVD)
SYNGAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SYNGAP1-AS1 Gene

Disorders for SYNGAP1-AS1 Gene

No disorders were found for SYNGAP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SYNGAP1-AS1 Gene

Publications for SYNGAP1-AS1 Gene

  1. Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders. (PMID: 24007600) Velmeshev D … Faghihi MA (Molecular autism 2013) 2 3

Products for SYNGAP1-AS1 Gene

Sources for SYNGAP1-AS1 Gene