Free for academic non-profit institutions. Other users need a Commercial license
SYDE2 (Synapse Defective Rho GTPase Homolog 2) is a Protein Coding gene. Diseases associated with SYDE2 include Hypophosphatasia, Adult. Among its related pathways are Signaling by GPCR and p75 NTR receptor-mediated signalling. Gene Ontology (GO) annotations related to this gene include GTPase activator activity. An important paralog of this gene is SYDE1.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005096 | GTPase activator activity | ISS | -- |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005829 | cytosol | TAS | -- |
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | p75 NTR receptor-mediated signalling |
.36
|
|
2 | Signaling by GPCR | ||
3 | Signaling by Rho GTPases |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0007165 | signal transduction | IEA | -- |
GO:0016477 | cell migration | IDA | 27917469 |
GO:0051056 | regulation of small GTPase mediated signal transduction | TAS | -- |
GO:0090630 | activation of GTPase activity | ISS | -- |
ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | |||||||||||||
SP2: | |||||||||||||||
SP3: | - |
This gene was present in the common ancestor of animals and fungi.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | SYDE2 30 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | SYDE2 30 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | SYDE2 30 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Syde2 30 17 31 |
|
OneToOne | |
Rat (Rattus norvegicus) |
Mammalia | Syde2 30 |
|
||
Platypus (Ornithorhynchus anatinus) |
Mammalia | SYDE2 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | SYDE2 31 |
|
OneToOne | |
Chicken (Gallus gallus) |
Aves | SYDE2 30 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | SYDE2 31 |
|
OneToOne | |
Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | syde2 30 |
|
||
Zebrafish (Danio rerio) |
Actinopterygii | SYDE2 31 |
|
OneToOne | |
LOC100333199 30 |
|
||||
Fruit Fly (Drosophila melanogaster) |
Insecta | RhoGAP100F 31 |
|
OneToMany | |
Worm (Caenorhabditis elegans) |
Secernentea | syd-1 31 |
|
OneToMany | |
Baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | BEM2 31 |
|
OneToMany | |
Sea Squirt (Ciona savignyi) |
Ascidiacea | CSA.767 31 |
|
OneToMany |
SNP ID | Clinical significance and condition | Chr 01 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
711053 | Likely Benign: not provided | 85,190,219(-) | C/T | MISSENSE_VARIANT | |
713881 | Benign: not provided | 85,190,190(-) | C/T | SYNONYMOUS_VARIANT | |
767681 | Benign: not provided | 85,183,190(-) | G/C | MISSENSE_VARIANT | |
781663 | Benign: not provided | 85,190,726(-) | A/G | MISSENSE_VARIANT | |
783290 | Benign: not provided | 85,190,686(-) | A/G | MISSENSE_VARIANT |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv347n54 | CNV | loss | 21841781 |
dgv348n54 | CNV | loss | 21841781 |
dgv349n54 | CNV | gain | 21841781 |
dgv350n54 | CNV | gain | 21841781 |
dgv351n54 | CNV | gain | 21841781 |
esv23473 | CNV | loss | 19812545 |
esv3329522 | CNV | insertion | 20981092 |
esv34165 | CNV | loss | 18971310 |
nsv546706 | CNV | gain+loss | 21841781 |
nsv546709 | CNV | loss | 21841781 |
nsv830459 | CNV | loss | 17160897 |
Disorder | Aliases | PubMed IDs |
---|---|---|
hypophosphatasia, adult |
|
|