Aliases for SVIL2P Gene

Aliases for SVIL2P Gene

  • Supervillin Family Member 2, Pseudogene 2 3 5
  • Supervillin Pseudogene 1 2 3
  • SVILP1 3

External Ids for SVIL2P Gene

Previous HGNC Symbols for SVIL2P Gene

  • SVILP1

Summaries for SVIL2P Gene

GeneCards Summary for SVIL2P Gene

SVIL2P (Supervillin Family Member 2, Pseudogene) is a Pseudogene.

Additional gene information for SVIL2P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SVIL2P Gene

Genomics for SVIL2P Gene

GeneHancer (GH) Regulatory Elements for SVIL2P Gene

Promoters and enhancers for SVIL2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030656 Enhancer 0.3 Ensembl ENCODE 750.6 +1.1 1119 0.8 SVIL2P lnc-MAP3K8-3 lnc-MAP3K8-13
GH10J030655 Enhancer 0.3 Ensembl ENCODE 750.6 0.0 -33 0.7 RF00017-637 SVIL2P lnc-MAP3K8-3
GH10J030700 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 19.5 +48.4 48363 6.6 NKRF POLR2A MLLT1 ZNF687 CREM ZBED1 IKZF1 BACH1 ZNF512 TRIM22 HSALNG0077057 SVIL2P SVIL ZNF438 DDX10P1 ZEB1-AS1 lnc-MAP3K8-14
GH10J031316 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 +665.4 665407 7.8 SP1 CTCF ZBTB6 POLR2A ZNF217 ZNF362 ETV6 HLF L3MBTL2 RAD21 ZEB1-AS1 ZEB1 lnc-MAP3K8-21 lnc-MAP3K8-25 SPTLC1P1 ENSG00000226842 RPS4XP11 SVIL2P lnc-ZNF438-1
GH10J030417 Enhancer 1.1 ENCODE dbSUPER 13.3 -237.0 -236987 2.5 ZBTB40 SMARCE1 ETV6 ELF1 HLF L3MBTL2 CEBPB TEAD4 MLLT1 BACH1 SVIL SVIL2P ZNF438 DDX10P1 CCND3P1 lnc-MTPAP-7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SVIL2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SVIL2P Gene

Genomic Locations for SVIL2P Gene
chr10:30,655,489-30,717,266
(GRCh38/hg38)
Size:
61,778 bases
Orientation:
Plus strand
chr10:30,960,495-31,006,195
(GRCh37/hg19)
Size:
45,701 bases
Orientation:
Plus strand

Genomic View for SVIL2P Gene

Genes around SVIL2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SVIL2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SVIL2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SVIL2P Gene

Proteins for SVIL2P Gene

Post-translational modifications for SVIL2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SVIL2P Gene

Domains & Families for SVIL2P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SVIL2P Gene

Function for SVIL2P Gene

Phenotypes From GWAS Catalog for SVIL2P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SVIL2P Gene

Localization for SVIL2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SVIL2P Gene

Pathways & Interactions for SVIL2P Gene

PathCards logo

SuperPathways for SVIL2P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SVIL2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SVIL2P Gene

Drugs & Compounds for SVIL2P Gene

No Compound Related Data Available

Transcripts for SVIL2P Gene

mRNA/cDNA for SVIL2P Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SVIL2P Gene

No ASD Table

Relevant External Links for SVIL2P Gene

GeneLoc Exon Structure for
SVIL2P
ECgene alternative splicing isoforms for
SVIL2P

Expression for SVIL2P Gene

NURSA nuclear receptor signaling pathways regulating expression of SVIL2P Gene:

SVIL2P

SOURCE GeneReport for Unigene cluster for SVIL2P Gene:

Hs.408581
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SVIL2P Gene

Orthologs for SVIL2P Gene

Evolution for SVIL2P Gene

ENSEMBL:
Gene Tree for SVIL2P (if available)
TreeFam:
Gene Tree for SVIL2P (if available)

No data available for Orthologs for SVIL2P Gene

Paralogs for SVIL2P Gene

No data available for Paralogs for SVIL2P Gene

Variants for SVIL2P Gene

Sequence variations from dbSNP and Humsavar for SVIL2P Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000192755 -- 30,715,763(+) C/T intron_variant
rs1000197889 -- 30,692,863(+) A/G intron_variant
rs1000348004 -- 30,707,406(+) C/T intron_variant
rs1000385395 -- 30,707,371(+) G/A intron_variant
rs1000417694 -- 30,693,141(+) T/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SVIL2P Gene

Variant ID Type Subtype PubMed ID
esv1485696 CNV insertion 17803354
esv3435320 CNV insertion 20981092
nsv1161936 CNV duplication 26073780
nsv947814 CNV duplication 23825009

Additional Variant Information for SVIL2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SVIL2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SVIL2P Gene

Disorders for SVIL2P Gene

Additional Disease Information for SVIL2P

No disorders were found for SVIL2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SVIL2P Gene

Publications for SVIL2P Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 56

No data available for External Links for SVIL2P Gene

Products for SVIL2P Gene

Sources for SVIL2P Gene