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Aliases for SVIL2P Gene
Aliases for SVIL2P Gene
External Ids for SVIL2P Gene
- HGNC: 44959
- Entrez Gene: 645954
- Ensembl: ENSG00000234814
Previous HGNC Symbols for SVIL2P Gene
- SVILP1
Summaries for SVIL2P Gene
GeneCards Summary for SVIL2P Gene
SVIL2P (Supervillin Family Member 2, Pseudogene) is a Pseudogene.
Additional gene information for SVIL2P Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SVIL2P Gene
Genomics for SVIL2P Gene
GeneHancer (GH) Regulatory Elements for SVIL2P Gene
Promoters and enhancers for SVIL2P Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH10J030656 | Enhancer | 0.3 | Ensembl ENCODE | 750.6 | +1.1 | 1119 | 0.8 | SVIL2P lnc-MAP3K8-3 lnc-MAP3K8-13 | ||
| GH10J030655 | Enhancer | 0.3 | Ensembl ENCODE | 750.6 | 0.0 | -33 | 0.7 | RF00017-637 SVIL2P lnc-MAP3K8-3 | ||
| GH10J030700 | Enhancer | 1.2 | FANTOM5 ENCODE dbSUPER | 19.5 | +48.4 | 48363 | 6.6 | NKRF POLR2A MLLT1 ZNF687 CREM ZBED1 IKZF1 BACH1 ZNF512 TRIM22 | HSALNG0077057 SVIL2P SVIL ZNF438 DDX10P1 ZEB1-AS1 lnc-MAP3K8-14 | |
| GH10J031316 | Promoter/Enhancer | 2.2 | EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 9.7 | +665.4 | 665407 | 7.8 | SP1 CTCF ZBTB6 POLR2A ZNF217 ZNF362 ETV6 HLF L3MBTL2 RAD21 | ZEB1-AS1 ZEB1 lnc-MAP3K8-21 lnc-MAP3K8-25 SPTLC1P1 ENSG00000226842 RPS4XP11 SVIL2P lnc-ZNF438-1 | |
| GH10J030417 | Enhancer | 1.1 | ENCODE dbSUPER | 13.3 | -237.0 | -236987 | 2.5 | ZBTB40 SMARCE1 ETV6 ELF1 HLF L3MBTL2 CEBPB TEAD4 MLLT1 BACH1 | SVIL SVIL2P ZNF438 DDX10P1 CCND3P1 lnc-MTPAP-7 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SVIL2P on UCSC Golden Path with GeneCards custom track
Genomic Locations for SVIL2P Gene
Genomic Locations for SVIL2P Gene
- chr10:30,655,489-30,717,266
- (GRCh38/hg38)
- Size:
- 61,778 bases
- Orientation:
- Plus strand
- chr10:30,960,495-31,006,195
- (GRCh37/hg19)
- Size:
- 45,701 bases
- Orientation:
- Plus strand
Genomic View for SVIL2P Gene
Genes around SVIL2P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 10p11.23 by HGNC
- 10p11.23 by Entrez Gene
- 10p11.23 by Ensembl
SVIL2P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SVIL2P Gene
Proteins for SVIL2P Gene
Post-translational modifications for SVIL2P Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SVIL2P
- Origene Custom Protein Services for SVIL2P
No data available for DME Specific Peptides for SVIL2P Gene
Domains & Families for SVIL2P Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SVIL2P Gene
Function for SVIL2P Gene
Phenotypes From GWAS Catalog for SVIL2P Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SVIL2P Gene
Localization for SVIL2P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SVIL2P Gene
Transcripts for SVIL2P Gene
mRNA/cDNA for SVIL2P Gene
- (2) Additional mRNA sequences :
- (3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000422642 2676 bps (ENST00000422642.6)
- ENST00000435645 525 bps (ENST00000435645.1)
- ENST00000450581 486 bps (ENST00000450581.1)
CRISPR Products
- Browse CRISPR knockouts for SVIL2P
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for SVIL2P Gene
NURSA nuclear receptor signaling pathways regulating expression of SVIL2P Gene:
SVIL2PSOURCE GeneReport for Unigene cluster for SVIL2P Gene:
Hs.408581
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SVIL2P Gene
Orthologs for SVIL2P Gene
No data available for Orthologs for SVIL2P Gene
Paralogs for SVIL2P Gene
No data available for Paralogs for SVIL2P Gene
Variants for SVIL2P Gene
| SNP ID | Clin | Chr 10 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000192755 | -- | 30,715,763(+) | C/T | intron_variant | |
| rs1000197889 | -- | 30,692,863(+) | A/G | intron_variant | |
| rs1000348004 | -- | 30,707,406(+) | C/T | intron_variant | |
| rs1000385395 | -- | 30,707,371(+) | G/A | intron_variant | |
| rs1000417694 | -- | 30,693,141(+) | T/C/G | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1485696 | CNV | insertion | 17803354 |
| esv3435320 | CNV | insertion | 20981092 |
| nsv1161936 | CNV | duplication | 26073780 |
| nsv947814 | CNV | duplication | 23825009 |
Additional Variant Information for SVIL2P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SVIL2P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SVIL2P Gene
Disorders for SVIL2P Gene
Additional Disease Information for SVIL2P
No disorders were found for SVIL2P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SVIL2P Gene
Publications for SVIL2P Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
- The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 56
No data available for External Links for SVIL2P Gene
Products for SVIL2P Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SVIL2P
- Origene Custom Protein Services for SVIL2P
- Browse OriGene Inhibitory RNA Products For SVIL2P
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SVIL2P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SVIL2P
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SVIL2P
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SVIL2P
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SVIL2P
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SVIL2P
Sources for SVIL2P Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource