SVIL-AS1 Gene (RNA Gene)

SVIL Antisense RNA 1

GC10P029410
GIFtS:
12

Aliases for SVIL-AS1 Gene

Subcategory (RNA class) for SVIL-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for SVIL-AS1 Gene

  • SVIL Antisense RNA 1 2 3 5
  • RP11-534G20.3 3
  • HSALNG0076970 169
  • NONHSAG005499 94
  • Lnc-LYZL1-14 170
  • Lnc-LYZL1-15 170
  • SVIL-AS1 2

External Ids for SVIL-AS1 Gene

Summaries for SVIL-AS1 Gene

GeneCards Summary for SVIL-AS1 Gene

SVIL-AS1 (SVIL Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SVIL-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SVIL-AS1 Gene

Genomics for SVIL-AS1 Gene

GeneHancer (GH) Regulatory Elements for SVIL-AS1 Gene

Promoters and enhancers for SVIL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J029408 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 772.2 +0.7 699 2.6 ZNF785 ZBTB40 POLR2A ZNF362 L3MBTL2 ZFP41 DACH1 ZNF121 MNT ZNF280D SVIL-AS1 ENSG00000287402 LOC105376474 WAC MIR604 MTPAP piR-43458
GH10J029469 Enhancer 1 Ensembl ENCODE dbSUPER 47.1 +62.1 62097 3.7 CTCF ELF1 L3MBTL2 DACH1 PRDM1 RXRA JUN NFE2 JUND MAFG SVIL-AS1 lnc-SVIL-1 lnc-LYZL1-11 SVIL
GH10J029482 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 35.2 +73.5 73459 1.7 MYC HLF SP1 CEBPG ZNF384 ZIC2 CEBPA ZNF629 CEBPB HNF4A SVIL-AS1 lnc-LYZL1-11 lnc-SVIL-1 SVIL
GH10J029473 Enhancer 0.8 Ensembl ENCODE dbSUPER 46.7 +65.7 65731 3.3 ZNF121 NFIB PKNOX1 NFIC ZC3H11A SVIL-AS1 lnc-SVIL-1 lnc-LYZL1-11 SVIL
GH10J029426 Enhancer 0.6 ENCODE 47.9 +17.1 17121 0.8 MIXL1 ZNF644 GATAD2A RXRB SOX13 ZKSCAN8 FOXA2 SAP130 FOXP1 TEAD3 piR-34593-005 SVIL-AS1 MIR604 lnc-SVIL-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SVIL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SVIL-AS1 Gene

Genomic Locations for SVIL-AS1 Gene
chr10:29,409,402-29,487,856
(GRCh38/hg38)
Size:
78,455 bases
Orientation:
Plus strand

Genomic View for SVIL-AS1 Gene

Genes around SVIL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SVIL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SVIL-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SVIL-AS1 Gene

Proteins for SVIL-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SVIL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SVIL-AS1 Gene

Domains & Families for SVIL-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SVIL-AS1 Gene

Function for SVIL-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SVIL-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SVIL-AS1 Gene

Localization for SVIL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SVIL-AS1 Gene

Pathways & Interactions for SVIL-AS1 Gene

PathCards logo

SuperPathways for SVIL-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SVIL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SVIL-AS1 Gene

Drugs & Compounds for SVIL-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SVIL-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SVIL-AS1 Gene

(11) REFSEQ mRNAs :
(13) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) NONCODE transcripts :
(43) RNACentral transcripts :
(19) LncBook transcripts :
(30) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SVIL-AS1 Gene

No ASD Table

Relevant External Links for SVIL-AS1 Gene

GeneLoc Exon Structure for
SVIL-AS1
ECgene alternative splicing isoforms for
SVIL-AS1

Expression for SVIL-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SVIL-AS1 Gene

mRNA expression in normal human tissues for SVIL-AS1 Gene
mRNA expression by GTEx for SVIL-AS1 Gene
genes like me logo Genes that share expression patterns with SVIL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SVIL-AS1 Gene

Orthologs for SVIL-AS1 Gene

Evolution for SVIL-AS1 Gene

ENSEMBL:
Gene Tree for SVIL-AS1 (if available)
TreeFam:
Gene Tree for SVIL-AS1 (if available)

No data available for Orthologs for SVIL-AS1 Gene

Paralogs for SVIL-AS1 Gene

No data available for Paralogs for SVIL-AS1 Gene

Variants for SVIL-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SVIL-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs150671744 uncertain-significance, not provided 29,463,569(+) T/G genic_downstream_transcript_variant, intron_variant
rs1000003895 -- 29,448,707(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000027471 -- 29,425,732(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000061741 -- 29,419,509(+) G/A intron_variant
rs1000102148 -- 29,418,227(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SVIL-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv142n67 CNV gain 20364138
dgv143n67 CNV gain 20364138
dgv14n6 CNV deletion 16902084
dgv387n106 CNV deletion 24896259
esv1000761 CNV deletion 20482838
esv1396971 CNV deletion 17803354
esv2127127 CNV deletion 18987734
esv2518867 CNV deletion 19546169
esv2659348 CNV deletion 23128226
esv2677009 CNV deletion 23128226
esv2734606 CNV deletion 23290073
esv2734928 CNV deletion 23290073
esv2734939 CNV deletion 23290073
esv2734950 CNV deletion 23290073
esv28423 CNV loss 19812545
esv3263718 CNV deletion 24192839
esv3546093 CNV deletion 23714750
esv3546094 CNV deletion 23714750
esv3622772 CNV loss 21293372
esv3622773 CNV loss 21293372
esv4280 CNV loss 18987735
nsv1038080 CNV gain 25217958
nsv1047143 CNV gain 25217958
nsv512155 CNV loss 21212237
nsv519798 CNV loss 19592680
nsv6210 CNV deletion 18451855
nsv819211 CNV gain 19587683
nsv820613 CNV deletion 20802225
nsv825326 CNV gain 20364138
nsv947800 CNV duplication 23825009
nsv955621 CNV deletion 24416366
nsv975794 CNV duplication 23825009

Additional Variant Information for SVIL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SVIL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SVIL-AS1 Gene

Disorders for SVIL-AS1 Gene

Additional Disease Information for SVIL-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SVIL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SVIL-AS1 Gene

Publications for SVIL-AS1 Gene

  1. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y … Li XJ (Arthritis research & therapy 2016) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

ExternalLinks

View latest publications for SVIL-AS1 gene in Mastermind

Products for SVIL-AS1 Gene

Sources for SVIL-AS1 Gene