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Aliases for SUZ12P1 Gene

Aliases for SUZ12P1 Gene

  • SUZ12 Polycomb Repressive Complex 2 Subunit Pseudogene 1 2 3 5
  • Suppressor Of Zeste 12 Homolog Pseudogene 1 2 3
  • Suppressor Of Zeste 12 Homolog Pseudogene 2
  • SUZ12P 3

External Ids for SUZ12P1 Gene

Previous HGNC Symbols for SUZ12P1 Gene

  • SUZ12P

Previous GeneCards Identifiers for SUZ12P1 Gene

  • GC17P029059
  • GC17P029038
  • GC17P029040

Summaries for SUZ12P1 Gene

GeneCards Summary for SUZ12P1 Gene

SUZ12P1 (SUZ12 Polycomb Repressive Complex 2 Subunit Pseudogene 1) is a Pseudogene.

Additional gene information for SUZ12P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SUZ12P1 Gene

Genomics for SUZ12P1 Gene

GeneHancer (GH) Regulatory Elements for SUZ12P1 Gene

Promoters and enhancers for SUZ12P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I030706 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 609.3 -0.5 -507 5 HDGF PKNOX1 ARNT ARID4B NEUROD1 SIN3A FEZF1 ZNF2 YY1 ZNF213 SUZ12P1 GC17P030711 GOSR1 ATAD5 NF1 LRRC37BP1 ENSG00000266490 TEFM SH3GL1P2 SMURF2P1
GH17I030818 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 33.8 +113.5 113484 8.4 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 POLR2B ZNF207 CRLF3 SUZ12P1 GOSR1 TEFM ATAD5 NSRP1 NF1 LOC101927093 LRRC37BP1 ENSG00000276250
GH17I030905 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 32.2 +197.2 197178 2.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 TEFM ADAP2 GC17P030905 GC17P030907 UTP6 SUZ12P1 ATAD5 GOSR1 NF1 ENSG00000264456
GH17I029743 Enhancer 1.4 Ensembl ENCODE dbSUPER 46.3 -964.5 -964467 1.8 FOXA2 SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF213 ZNF302 KLF13 ZNF662 GOSR1 LRRC37BP1 SH3GL1P2 SUZ12P1 SMURF2P1 CORO6 NUFIP2 TBC1D29 ENSG00000264290 LOC101927018
GH17I030697 Enhancer 1.3 Ensembl ENCODE dbSUPER 47.6 -11.2 -11205 1.4 ARID4B SIN3A GLI4 ZNF2 GTF3C2 ZNF121 ZNF213 ZNF143 ATF7 KLF13 SUZ12P1 ENSG00000266490 ENSG00000265791 NF1 LRRC37BP1 RN7SL316P LOC100420850
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SUZ12P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SUZ12P1 Gene

Genomic Locations for SUZ12P1 Gene
chr17:30,709,299-30,790,908
(GRCh38/hg38)
Size:
81,610 bases
Orientation:
Plus strand
chr17:29,036,317-29,117,926
(GRCh37/hg19)

Genomic View for SUZ12P1 Gene

Genes around SUZ12P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUZ12P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUZ12P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUZ12P1 Gene

Proteins for SUZ12P1 Gene

Post-translational modifications for SUZ12P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUZ12P1 Gene

Domains & Families for SUZ12P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SUZ12P1 Gene

Function for SUZ12P1 Gene

Phenotypes From GWAS Catalog for SUZ12P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUZ12P1 Gene

Localization for SUZ12P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SUZ12P1 Gene

Pathways & Interactions for SUZ12P1 Gene

SuperPathways for SUZ12P1 Gene

No Data Available

Interacting Proteins for SUZ12P1 Gene

Gene Ontology (GO) - Biological Process for SUZ12P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SUZ12P1 Gene

Drugs & Compounds for SUZ12P1 Gene

No Compound Related Data Available

Transcripts for SUZ12P1 Gene

mRNA/cDNA for SUZ12P1 Gene

(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SUZ12P1 Gene

Suppressor of zeste 12 homolog pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SUZ12P1 Gene

No ASD Table

Relevant External Links for SUZ12P1 Gene

GeneLoc Exon Structure for
SUZ12P1
ECgene alternative splicing isoforms for
SUZ12P1

Expression for SUZ12P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SUZ12P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SUZ12P1 Gene:

SUZ12P1

SOURCE GeneReport for Unigene cluster for SUZ12P1 Gene:

Hs.628886
genes like me logo Genes that share expression patterns with SUZ12P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SUZ12P1 Gene

Orthologs for SUZ12P1 Gene

Evolution for SUZ12P1 Gene

ENSEMBL:
Gene Tree for SUZ12P1 (if available)
TreeFam:
Gene Tree for SUZ12P1 (if available)

No data available for Orthologs for SUZ12P1 Gene

Paralogs for SUZ12P1 Gene

No data available for Paralogs for SUZ12P1 Gene

Variants for SUZ12P1 Gene

Sequence variations from dbSNP and Humsavar for SUZ12P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000009683 -- 30,733,620(+) T/C intron_variant
rs1000084336 -- 30,739,550(+) G/T intron_variant
rs1000097059 -- 30,768,912(+) C/T intron_variant
rs1000155272 -- 30,757,933(+) TTTTT/TTTT intron_variant
rs1000168828 -- 30,760,074(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SUZ12P1 Gene

Variant ID Type Subtype PubMed ID
nsv978406 CNV duplication 23825009
nsv962303 CNV duplication 23825009
nsv833411 CNV loss 17160897
nsv827943 CNV gain 20364138
nsv457720 CNV loss 19166990
nsv1126454 CNV deletion 24896259
nsv1072728 CNV deletion 25765185
esv3892992 CNV loss 25118596
esv3640355 CNV loss 21293372
esv3640354 CNV loss 21293372
esv3640353 CNV loss 21293372
esv3640352 CNV loss 21293372
esv2715813 CNV deletion 23290073
esv2673451 CNV deletion 23128226

Additional Variant Information for SUZ12P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUZ12P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SUZ12P1 Gene

Disorders for SUZ12P1 Gene

Additional Disease Information for SUZ12P1

No disorders were found for SUZ12P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUZ12P1 Gene

Publications for SUZ12P1 Gene

  1. Type 2 NF1 deletions are highly unusual by virtue of the absence of nonallelic homologous recombination hotspots and an apparent preference for female mitotic recombination. (PMID: 17999360) Steinmann K … Kehrer-Sawatzki H (American journal of human genetics 2007) 2 3 58
  2. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R … Losekoot M (American journal of medical genetics. Part A 2009) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SUZ12P1 Gene

Sources for SUZ12P1 Gene

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