Aliases for SUCO Gene

Aliases for SUCO Gene

  • SUN Domain Containing Ossification Factor 2 3 5
  • SUN-Like Protein 1 2 3 4
  • SUN Domain-Containing Ossification Factor 3 4
  • Membrane Protein CH1 3 4
  • Osteopotentia 2 3
  • C1orf9 3 4
  • SLP1 3 4
  • CH1 3 4
  • OPT 3 4
  • Chromosome 1 Open Reading Frame 9 2
  • Protein Osteopotentia Homolog 4

External Ids for SUCO Gene

Previous HGNC Symbols for SUCO Gene

  • C1orf9

Previous GeneCards Identifiers for SUCO Gene

  • GC01P172502

Summaries for SUCO Gene

GeneCards Summary for SUCO Gene

SUCO (SUN Domain Containing Ossification Factor) is a Protein Coding gene. Diseases associated with SUCO include Alpha Chain Disease and Heavy Chain Disease.

UniProtKB/Swiss-Prot Summary for SUCO Gene

  • Required for bone modeling during late embryogenesis. Regulates type I collagen synthesis in osteoblasts during their postnatal maturation (By similarity).

Additional gene information for SUCO Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SUCO Gene

Genomics for SUCO Gene

GeneHancer (GH) Regulatory Elements for SUCO Gene

Promoters and enhancers for SUCO Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J172531 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 763.5 +1.1 1138 4.6 ZNF24 ZBTB40 SP1 SREBF1 SIX5 ZBTB6 FOXA1 RBPJ SMARCE1 POLR2A SUCO lnc-PIGC-4 EEF1AKNMT PIGC DNM3 MYOC VAMP4 piR-61240-015
GH01J172448 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 21.1 -81.1 -81078 6.4 CTCF RBPJ SMARCE1 POLR2A TCF7L2 NR2F1 NR2F6 ATF1 ZNF217 CREB1 PIGC C1orf105 EEF1AKNMT SUCO PRRC2C LOC102724528
GH01J172455 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 21.4 -75.6 -75648 3.4 SMARCE1 CC2D1A TEAD4 ZKSCAN8 CBFA2T2 SMARCA4 ZNF639 TRIM24 GMEB1 IKZF1 PIGC LOC102724528 SUCO C1orf105 DNM3OS MYOC MIR199A2 piR-56133-013
GH01J172495 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 20.6 -33.3 -33349 6 SREBF1 SMARCE1 TCF7L2 ZNF217 CREB1 HLF L3MBTL2 MNT ELF3 SP1 SUCO PIGC C1orf105 piR-56133-013 lnc-SUCO-1
GH01J172470 Enhancer 1.3 Ensembl ENCODE dbSUPER 22.9 -57.2 -57151 11.2 GATA3 FOXA1 MLX RBPJ TCF7L2 NR2F6 ATF1 ZNF217 CREB1 MIXL1 C1orf105 PIGC SUCO EEF1AKNMT RNU6-157P LOC102724528 piR-56133-013
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SUCO on UCSC Golden Path with GeneCards custom track

Genomic Locations for SUCO Gene

Genomic Locations for SUCO Gene
chr1:172,532,349-172,611,833
(GRCh38/hg38)
Size:
79,485 bases
Orientation:
Plus strand
chr1:172,501,489-172,580,973
(GRCh37/hg19)
Size:
79,485 bases
Orientation:
Plus strand

Genomic View for SUCO Gene

Genes around SUCO on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUCO Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUCO Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUCO Gene

Proteins for SUCO Gene

  • Protein details for SUCO Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UBS9-SUCO_HUMAN
    Recommended name:
    SUN domain-containing ossification factor
    Protein Accession:
    Q9UBS9
    Secondary Accessions:
    • B2RNU4
    • Q9BQB9
    • Q9BXQ2
    • Q9UL04

    Protein attributes for SUCO Gene

    Size:
    1254 amino acids
    Molecular mass:
    139430 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SUCO Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SUCO Gene

Post-translational modifications for SUCO Gene

  • O-glycosylated. O-mannosylated by POMT1 and POMT2 and elongated by POMGNT1.
  • N-glycosylated.
  • Glycosylation at Asn202, Asn236, Asn524, Asn530, Asn928, Asn955, and Asn963
  • Modification sites at PhosphoSitePlus
  • Glycosylation from GlyConnect

No data available for DME Specific Peptides for SUCO Gene

Domains & Families for SUCO Gene

Gene Families for SUCO Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for SUCO Gene

Suggested Antigen Peptide Sequences for SUCO Gene

GenScript: Design optimal peptide antigens:
  • Protein osteopotentia homolog (OSPT_HUMAN)
genes like me logo Genes that share domains with SUCO: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SUCO Gene

Function for SUCO Gene

Molecular function for SUCO Gene

UniProtKB/Swiss-Prot Function:
Required for bone modeling during late embryogenesis. Regulates type I collagen synthesis in osteoblasts during their postnatal maturation (By similarity).

Phenotypes From GWAS Catalog for SUCO Gene

genes like me logo Genes that share phenotypes with SUCO: view

Animal Model Products

CRISPR Products

miRNA for SUCO Gene

miRTarBase miRNAs that target SUCO

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SUCO

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SUCO Gene

Localization for SUCO Gene

Subcellular locations from UniProtKB/Swiss-Prot for SUCO Gene

Rough endoplasmic reticulum membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SUCO gene
Compartment Confidence
endoplasmic reticulum 4
plasma membrane 3
extracellular 2
nucleus 2
cytosol 2
cytoskeleton 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoli fibrillar center (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SUCO Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA 21873635
GO:0005783 endoplasmic reticulum IEA --
GO:0005791 rough endoplasmic reticulum ISS --
GO:0016020 membrane ISS,IBA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SUCO: view

Pathways & Interactions for SUCO Gene

PathCards logo

SuperPathways for SUCO Gene

No Data Available

Gene Ontology (GO) - Biological Process for SUCO Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001503 ossification IEA --
GO:0007275 multicellular organism development IEA --
GO:0032967 positive regulation of collagen biosynthetic process ISS --
GO:0034975 protein folding in endoplasmic reticulum IBA 21873635
GO:0045669 positive regulation of osteoblast differentiation ISS --
genes like me logo Genes that share ontologies with SUCO: view

No data available for Pathways by source and SIGNOR curated interactions for SUCO Gene

Drugs & Compounds for SUCO Gene

No Compound Related Data Available

Transcripts for SUCO Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SUCO

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SUCO Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15
SP1:
SP2: -
SP3:
SP4:
SP5: - -
SP6:

Relevant External Links for SUCO Gene

GeneLoc Exon Structure for
SUCO
ECgene alternative splicing isoforms for
SUCO

Expression for SUCO Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SUCO Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SUCO Gene

This gene is overexpressed in Bone (21.8), Plasma (17.9), Adrenal (15.1), and Neutrophil (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SUCO Gene



NURSA nuclear receptor signaling pathways regulating expression of SUCO Gene:

SUCO

SOURCE GeneReport for Unigene cluster for SUCO Gene:

Hs.204559

mRNA Expression by UniProt/SwissProt for SUCO Gene:

Q9UBS9-SUCO_HUMAN
Tissue specificity: Highly expressed in pancreas and testis and to a lower extent in prostate, ovary, heart, thymus, small intestine and spleen.

Evidence on tissue expression from TISSUES for SUCO Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with SUCO: view

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for SUCO Gene

Orthologs for SUCO Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SUCO Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SUCO 33 32
  • 99.73 (n)
OneToOne
cow
(Bos Taurus)
Mammalia SUCO 33 32
  • 91.41 (n)
OneToOne
dog
(Canis familiaris)
Mammalia SUCO 33 32
  • 91.17 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Suco 17 33 32
  • 88.1 (n)
rat
(Rattus norvegicus)
Mammalia Suco 32
  • 86.86 (n)
oppossum
(Monodelphis domestica)
Mammalia SUCO 33
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SUCO 33
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves C8H1ORF9 32
  • 73.2 (n)
SUCO 33
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 33
  • 81 (a)
OneToMany
-- 33
  • 55 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia suco 32
  • 65.78 (n)
zebrafish
(Danio rerio)
Actinopterygii suco 33 32
  • 54.8 (n)
OneToOne
-- 32
fruit fly
(Drosophila melanogaster)
Insecta CG31678 33
  • 18 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea R12E2.2 33
  • 23 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SLP1 35 33
  • 26 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 33
  • 22 (a)
OneToOne
Cin.13589 32
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13589 32
Species where no ortholog for SUCO was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SUCO Gene

ENSEMBL:
Gene Tree for SUCO (if available)
TreeFam:
Gene Tree for SUCO (if available)
Aminode:
Evolutionary constrained regions (ECRs) for SUCO: view image

Paralogs for SUCO Gene

No data available for Paralogs for SUCO Gene

Variants for SUCO Gene

Sequence variations from dbSNP and Humsavar for SUCO Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000027110 -- 172,535,503(+) C/G intron_variant
rs1000096698 -- 172,588,083(+) A/C intron_variant
rs1000120342 -- 172,540,258(+) G/A intron_variant
rs1000149093 -- 172,605,242(+) C/A intron_variant
rs1000153355 -- 172,568,057(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SUCO Gene

Variant ID Type Subtype PubMed ID
esv7885 CNV loss 19470904
nsv3554 CNV insertion 18451855

Variation tolerance for SUCO Gene

Residual Variation Intolerance Score: 8.49% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.61; 91.32% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SUCO Gene

Human Gene Mutation Database (HGMD)
SUCO
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUCO

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SUCO Gene

Disorders for SUCO Gene

MalaCards: The human disease database

(7) MalaCards diseases for SUCO Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
alpha chain disease
  • seligmann's disease
heavy chain disease
  • hcd
gamma heavy chain disease
  • franklin's disease
mu chain disease
  • mu-chain disease
spondylocarpotarsal synostosis syndrome
  • sct
- elite association - COSMIC cancer census association via MalaCards
Search SUCO in MalaCards View complete list of genes associated with diseases

Additional Disease Information for SUCO

genes like me logo Genes that share disorders with SUCO: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SUCO Gene

Publications for SUCO Gene

  1. The C1orf9 gene encodes a putative transmembrane member of a novel protein family. (PMID: 10673381) Røsok O … Aasheim HC (Biochemical and biophysical research communications 2000) 2 3 4 56
  2. Osteopotentia regulates osteoblast maturation, bone formation, and skeletal integrity in mice. (PMID: 20440000) Sohaskey ML … Harland RM (The Journal of cell biology 2010) 2 3 56
  3. Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1. (PMID: 11158380) Yu N … Li WH (Molecular biology and evolution 2001) 3 4 56
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 56
  5. Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2. (PMID: 28512129) Larsen ISB … Halim A (The Journal of biological chemistry 2017) 4 56

Products for SUCO Gene

Sources for SUCO Gene