Aliases for SUCLA2-AS1 Gene

Subcategory (RNA class) for SUCLA2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SUCLA2-AS1 Gene

  • SUCLA2 Antisense RNA 1 2 3 5
  • SUCLA2-AS1 2 5 165
  • SUCLA2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG013472.2 91
  • HSALNG0096951 164

External Ids for SUCLA2-AS1 Gene

Previous GeneCards Identifiers for SUCLA2-AS1 Gene

  • GC00U932976
  • GC13P048576

Summaries for SUCLA2-AS1 Gene

GeneCards Summary for SUCLA2-AS1 Gene

SUCLA2-AS1 (SUCLA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SUCLA2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SUCLA2-AS1 Gene

Genomics for SUCLA2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SUCLA2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J047999 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 609.9 -0.4 -425 4.3 GATAD2A KDM1A POLR2A RCOR2 ZNF7 LARP7 RBFOX2 RXRB SMAD5 RCOR1 SUCLA2 SUCLA2-AS1 lnc-MED4-2 piR-34822-078 MED4 MED4-AS1 NUDT15
GH13J048036 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.1 +37.3 37332 5 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 REST ZNF629 TFE3 NFKBIZ SUCLA2 NUDT15 L13714-105 MED4 PPP1R26P1 SUCLA2-AS1
GH13J047660 Enhancer 0.6 Ensembl ENCODE 4.8 -340.2 -340168 1.1 JUND FOS BHLHE40 SUCLA2-AS1 piR-40110-158 piR-39858-153 NUDT15 HTR2A
GH13J048007 Enhancer 0.2 Ensembl 9.9 +4.7 4712 0.2 SUCLA2-AS1 piR-52294-044 SUCLA2 NUDT15
GH13J048250 Enhancer 0.3 ENCODE dbSUPER 4.6 +250.3 250345 2 MED4 RB1 SUCLA2-AS1 ITM2B NONHSAG013474.2 lnc-RB1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SUCLA2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SUCLA2-AS1 Gene

Genomic Locations for SUCLA2-AS1 Gene
chr13:48,001,389-48,005,001
(GRCh38/hg38)
Size:
3,613 bases
Orientation:
Plus strand
chr13:48,575,525-48,576,688
(GRCh37/hg19)
Size:
1,164 bases
Orientation:
Plus strand

Genomic View for SUCLA2-AS1 Gene

Genes around SUCLA2-AS1 on UCSC Golden Path with GeneCards custom track
SUCLA2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SUCLA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUCLA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SUCLA2-AS1 Gene

Proteins for SUCLA2-AS1 Gene

Post-translational modifications for SUCLA2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUCLA2-AS1 Gene

Domains & Families for SUCLA2-AS1 Gene

Gene Families for SUCLA2-AS1 Gene

genes like me logo Genes that share domains with SUCLA2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SUCLA2-AS1 Gene

Function for SUCLA2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUCLA2-AS1 Gene

Localization for SUCLA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SUCLA2-AS1 Gene

Pathways & Interactions for SUCLA2-AS1 Gene

PathCards logo

SuperPathways for SUCLA2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SUCLA2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SUCLA2-AS1 Gene

Drugs & Compounds for SUCLA2-AS1 Gene

No Compound Related Data Available

Transcripts for SUCLA2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SUCLA2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D4D47_9606 lncRNA 552 5

HGNC: 39965,

Ensembl: ENST00000423869 (view in UCSC) ,

LncBook: HSALNT0201450,

LNCipedia: SUCLA2-AS1:1,

NONCODE: NONHSAT033697.2,

URS0000D5722F_9606 lncRNA 536 2

LncBook: HSALNT0201452,

LNCipedia: SUCLA2-AS1:2,

URS0000D58993_9606 lncRNA 3597 1

LNCipedia: SUCLA2-AS1:3,

SUCLA2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SUCLA2-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SUCLA2-AS1 Gene

No ASD Table

Relevant External Links for SUCLA2-AS1 Gene

GeneLoc Exon Structure for
SUCLA2-AS1

Expression for SUCLA2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SUCLA2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SUCLA2-AS1

genes like me logo Genes that share expression patterns with SUCLA2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SUCLA2-AS1 Gene

Orthologs for SUCLA2-AS1 Gene

Evolution for SUCLA2-AS1 Gene

ENSEMBL:
Gene Tree for SUCLA2-AS1 (if available)
TreeFam:
Gene Tree for SUCLA2-AS1 (if available)

No data available for Orthologs for SUCLA2-AS1 Gene

Paralogs for SUCLA2-AS1 Gene

No data available for Paralogs for SUCLA2-AS1 Gene

Variants for SUCLA2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SUCLA2-AS1 Gene

SNP ID Clinical significance and condition Chr 13 pos Variation AA Info Type
676448 Benign: not provided 48,001,451(+) G/C
684102 Benign: not provided 48,001,557(+) G/T

Additional Variant Information for SUCLA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUCLA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SUCLA2-AS1 Gene

Disorders for SUCLA2-AS1 Gene

Additional Disease Information for SUCLA2-AS1

No disorders were found for SUCLA2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SUCLA2-AS1 Gene

Publications for SUCLA2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SUCLA2-AS1 Gene

Sources for SUCLA2-AS1 Gene