Aliases for SUB1P1 Gene

Aliases for SUB1P1 Gene

  • SUB1 Pseudogene 1 2 3 5
  • SUB1 Homolog, Transcriptional Regulator Pseudogene 1 2 3
  • SUB1 Homolog (S. Cerevisiae) Pseudogene 1 2
  • SUB1 Homolog Pseudogene 1 3
  • HCG17750 3
  • SUB1P1 5

External Ids for SUB1P1 Gene

Previous GeneCards Identifiers for SUB1P1 Gene

  • GC08P011683
  • GC00U922063
  • GC08P010578
  • GC08P011648
  • GC08P011651

Summaries for SUB1P1 Gene

GeneCards Summary for SUB1P1 Gene

SUB1P1 (SUB1 Pseudogene 1) is a Pseudogene.

Additional gene information for SUB1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SUB1P1 Gene

Genomics for SUB1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SUB1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011789 Promoter/Enhancer 0.8 Ensembl ENCODE 261.9 -0.2 -243 1.3 ZFP91 RFX1 ESRRA ZBTB17 PRDM1 SUB1P1 lnc-NEIL2-1 FDFT1 NEIL2 CTSB piR-57991 LOC105379243
GH08J011799 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 7.5 +15.5 15455 12.4 BCLAF1 SP1 ZNF207 NCOR1 MYC IKZF1 ZNF600 ZNF592 POLR2A CEBPA FDFT1 ENSG00000255122 LOC101929290 NEIL2 CTSB FAM86B2 BLK RPS3AP34 SUB1P1 ENSG00000255495
GH08J011787 Enhancer 0.9 Ensembl ENCODE 8.9 -2.2 -2151 2 ZNF600 REST FOSL2 JUND SKIL RAD21 CTCF FOXK2 GLIS1 SP7 HSALNG0063459 piR-34770 piR-57991 piR-46545 piR-53372-002 piR-46930 NEIL2 FDFT1 SUB1P1 lnc-NEIL2-1
GH08J011748 Enhancer 0.3 Ensembl dbSUPER 5.4 -40.8 -40816 0.7 DEFB136 DEFB135 FAM167A SUB1P1 LINC02905 NEIL2 SNORA99 GATA4
GH08J011792 Enhancer 0.2 Ensembl 0.7 +2.4 2449 0.4 FDFT1 SUB1P1 piR-39098-258 LOC105379243 NEIL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SUB1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SUB1P1 Gene

Latest Assembly
chr8:11,789,952-11,791,285
(GRCh38/hg38)
Size:
1,334 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,647,461-11,648,794
(GRCh37/hg19 by Entrez Gene)
Size:
1,334 bases
Orientation:
Plus strand

chr8:11,647,514-11,647,897
(GRCh37/hg19 by Ensembl)
Size:
384 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,557,022-1,558,141 (-)

Genomic View for SUB1P1 Gene

Genes around SUB1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SUB1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SUB1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SUB1P1 Gene

Proteins for SUB1P1 Gene

Post-translational modifications for SUB1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SUB1P1 Gene

Domains & Families for SUB1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SUB1P1 Gene

Function for SUB1P1 Gene

Phenotypes From GWAS Catalog for SUB1P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SUB1P1 Gene

Localization for SUB1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SUB1P1 Gene

Pathways & Interactions for SUB1P1 Gene

PathCards logo

SuperPathways for SUB1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SUB1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SUB1P1 Gene

Drugs & Compounds for SUB1P1 Gene

No Compound Related Data Available

Transcripts for SUB1P1 Gene

mRNA/cDNA for SUB1P1 Gene

1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SUB1P1 Gene

No ASD Table

Relevant External Links for SUB1P1 Gene

GeneLoc Exon Structure for
SUB1P1

Expression for SUB1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SUB1P1 Gene

genes like me logo Genes that share expression patterns with SUB1P1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SUB1P1 Gene

Orthologs for SUB1P1 Gene

Evolution for SUB1P1 Gene

ENSEMBL:
Gene Tree for SUB1P1 (if available)
TreeFam:
Gene Tree for SUB1P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SUB1P1

No data available for Orthologs for SUB1P1 Gene

Paralogs for SUB1P1 Gene

No data available for Paralogs for SUB1P1 Gene

Variants for SUB1P1 Gene

Additional Variant Information for SUB1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SUB1P1
Leiden Open Variation Database (LOVD)
SUB1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SUB1P1 Gene

Disorders for SUB1P1 Gene

No disorders were found for SUB1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SUB1P1 Gene

Publications for SUB1P1 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for SUB1P1 Gene

Products for SUB1P1 Gene

Sources for SUB1P1 Gene