Aliases for STX18P1 Gene

Aliases for STX18P1 Gene

  • Syntaxin 18 Pseudogene 1 2 3
  • Syntaxin 18 (STX18) Pseudogene 5
  • AC104996.2 5

External Ids for STX18P1 Gene

Previous GeneCards Identifiers for STX18P1 Gene

  • GC17P028397

Summaries for STX18P1 Gene

GeneCards Summary for STX18P1 Gene

STX18P1 (Syntaxin 18 Pseudogene 1) is a Pseudogene.

Additional gene information for STX18P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for STX18P1 Gene

Genomics for STX18P1 Gene

GeneHancer (GH) Regulatory Elements for STX18P1 Gene

Promoters and enhancers for STX18P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J030104 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas 0.3 +36.3 36273 1.5 GTF3C2 CTCF ZBTB6 RBPJ NR2F6 MIXL1 MYC CC2D1A ELF1 HLF CORO6 BLMH SH3GL1P2 NUFIP2 ATAD5 RNU6-1267P GOSR1 DPRXP4 RNF135 ENSG00000264456
GH17J030095 Enhancer 1 Ensembl ENCODE 0.3 +27.2 27195 1.3 CTCF ZNF280D MAFK SP7 ZSCAN21 SMARCA4 IKZF1 PRDM10 ZNF639 ZEB2 CORO6 GOSR1 TEFM NUFIP2 ATAD5 DPRXP4 ENSG00000231421 NSRP1 ENSG00000265394 STX18P1
GH17J030093 Enhancer 0.8 Ensembl ENCODE 0.3 +25.1 25053 0.6 CTCF ZBTB6 CC2D1A RAD21 IKZF1 ARID2 REST ZNF512 TRIM22 ZNF143 NSRP1 ENSG00000265394 STX18P1 EFCAB5
GH17J030112 Enhancer 0.9 Ensembl ENCODE 0.3 +44.7 44669 1.8 ZBTB40 USF2 HLF SP1 MAFK MLLT1 IKZF1 PRDM10 IKZF2 FOXA2 CORO6 RNU6-1267P BLMH ENSG00000265394 NSRP1 STX18P1
GH17J030091 Enhancer 0.5 Ensembl ENCODE 0.3 +23.0 23012 1.4 RFX5 JUND CORO6 NSRP1 ENSG00000265743 STX18P1 ENSG00000265394 EFCAB5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around STX18P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STX18P1 Gene

Genomic Locations for STX18P1 Gene
chr17:30,068,632-30,069,631
(GRCh38/hg38)
Size:
1,000 bases
Orientation:
Plus strand
chr17:28,395,650-28,396,649
(GRCh37/hg19)
Size:
1,000 bases
Orientation:
Plus strand

Genomic View for STX18P1 Gene

Genes around STX18P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18P1 Gene

Proteins for STX18P1 Gene

Post-translational modifications for STX18P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18P1 Gene

Domains & Families for STX18P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for STX18P1 Gene

Function for STX18P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18P1 Gene

Localization for STX18P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STX18P1 Gene

Pathways & Interactions for STX18P1 Gene

PathCards logo

SuperPathways for STX18P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for STX18P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18P1 Gene

Drugs & Compounds for STX18P1 Gene

No Compound Related Data Available

Transcripts for STX18P1 Gene

mRNA/cDNA for STX18P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STX18P1 Gene

No ASD Table

Relevant External Links for STX18P1 Gene

GeneLoc Exon Structure for
STX18P1
ECgene alternative splicing isoforms for
STX18P1

Expression for STX18P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STX18P1 Gene

mRNA differential expression in normal tissues according to GTEx for STX18P1 Gene

This gene is overexpressed in Testis (x6.7) and Brain - Cerebellar Hemisphere (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of STX18P1 Gene:

STX18P1
genes like me logo Genes that share expression patterns with STX18P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18P1 Gene

Orthologs for STX18P1 Gene

Evolution for STX18P1 Gene

ENSEMBL:
Gene Tree for STX18P1 (if available)
TreeFam:
Gene Tree for STX18P1 (if available)

No data available for Orthologs for STX18P1 Gene

Paralogs for STX18P1 Gene

No data available for Paralogs for STX18P1 Gene

Variants for STX18P1 Gene

Additional Variant Information for STX18P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STX18P1 Gene

Disorders for STX18P1 Gene

No disorders were found for STX18P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for STX18P1 Gene

Publications for STX18P1 Gene

No publications were found for STX18P1 Gene.

No data available for External Links for STX18P1 Gene

Products for STX18P1 Gene

Sources for STX18P1 Gene