Aliases for STX18-AS1 Gene

Subcategory (RNA class) for STX18-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for STX18-AS1 Gene

  • STX18 Antisense RNA 1 (Head To Head) 2 3 5
  • STX18-AS1 2 168
  • HSALNG0032541 167
  • NONHSAG037368 92
  • NONHSAG037370 92

External Ids for STX18-AS1 Gene

Summaries for STX18-AS1 Gene

GeneCards Summary for STX18-AS1 Gene

STX18-AS1 (STX18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with STX18-AS1 include Ebstein Anomaly and Tooth Agenesis.

Additional gene information for STX18-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for STX18-AS1 Gene

Genomics for STX18-AS1 Gene

GeneHancer (GH) Regulatory Elements for STX18-AS1 Gene

Promoters and enhancers for STX18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J004540 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 523.9 -0.4 -422 3.8 RXRA EP300 FOXK2 HNRNPK ZBTB40 ZNF217 ZSCAN5C SIN3A NRF1 MYC STX18-AS1 STX18 TMEM128 FAM86EP NSG1 ZBTB49 piR-38352-393
GH04J004713 Enhancer 0.8 Ensembl 10.3 +171.1 171078 0.8 NCOR1 TCF7 ZBTB25 ZBTB7A SKI TEAD1 ZKSCAN8 KMT2B FOXA2 CEBPB lnc-STX18-2 STX18-AS1 ZBTB49 KR153194-142
GH04J004692 Enhancer 1.1 Ensembl ENCODE 7.9 +152.2 152233 4.1 FOXK2 CTCF NCOR1 ZIC2 KDM6A TCF7 TGIF2 SKI TEAD1 ZKSCAN8 STX18-AS1 KR153194-142 lnc-STX18-2 lnc-MSX1-5
GH04J004703 Enhancer 0.5 Ensembl 8.2 +162.3 162278 1.2 ZNF589 CEBPG MYC MAX ATF3 CEBPB NR2C2 STX18-AS1 KR153194-142 lnc-STX18-2
GH04J004680 Enhancer 0.5 ENCODE 5.7 +139.9 139898 3.7 ZNF189 HNF4A ZMYM3 HNF1A SP1 EP300 ZNF157 HNF4G STX18-AS1 KR153194-142 SNORD162-001 lnc-MSX1-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STX18-AS1 Gene

Genomic Locations for STX18-AS1 Gene
chr4:4,542,123-4,788,074
(GRCh38/hg38)
Size:
245,952 bases
Orientation:
Plus strand
chr4:4,543,858-4,712,665
(GRCh37/hg19)
Size:
168,808 bases
Orientation:
Plus strand

Genomic View for STX18-AS1 Gene

Genes around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-AS1 Gene

Proteins for STX18-AS1 Gene

Post-translational modifications for STX18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-AS1 Gene

Domains & Families for STX18-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for STX18-AS1 Gene

Function for STX18-AS1 Gene

Phenotypes From GWAS Catalog for STX18-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-AS1 Gene

Localization for STX18-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STX18-AS1 gene
Compartment Confidence
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STX18-AS1 Gene

Pathways & Interactions for STX18-AS1 Gene

PathCards logo

SuperPathways for STX18-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for STX18-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for STX18-AS1 Gene

Drugs & Compounds for STX18-AS1 Gene

No Compound Related Data Available

Transcripts for STX18-AS1 Gene

mRNA/cDNA for STX18-AS1 Gene

42 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
19 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
9 NONCODE transcripts :
10 LncBook transcripts :
23 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-AS1 Gene

No ASD Table

Relevant External Links for STX18-AS1 Gene

GeneLoc Exon Structure for
STX18-AS1

Expression for STX18-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STX18-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for STX18-AS1

genes like me logo Genes that share expression patterns with STX18-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18-AS1 Gene

Orthologs for STX18-AS1 Gene

Evolution for STX18-AS1 Gene

ENSEMBL:
Gene Tree for STX18-AS1 (if available)
TreeFam:
Gene Tree for STX18-AS1 (if available)

No data available for Orthologs for STX18-AS1 Gene

Paralogs for STX18-AS1 Gene

No data available for Paralogs for STX18-AS1 Gene

Variants for STX18-AS1 Gene

Additional dbSNP identifiers (rs#s) for STX18-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for STX18-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2144946 CNV deletion 18987734
esv21817 CNV loss 19812545
esv2547368 CNV deletion 19546169
esv2659553 CNV deletion 23128226
esv2726968 CNV deletion 23290073
esv34196 OTHER inversion 12058347
esv3599463 CNV loss 21293372
esv3599465 CNV loss 21293372
nsv1007737 CNV gain 25217958
nsv1117055 CNV deletion 24896259
nsv1153463 CNV deletion 26484159
nsv292566 CNV deletion 16902084
nsv521279 CNV loss 19592680
nsv821107 CNV duplication 20802225
nsv829843 CNV loss 17160897

Additional Variant Information for STX18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for STX18-AS1 Gene

Disorders for STX18-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for STX18-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
ebstein anomaly
  • ebstein's anomaly
tooth agenesis
  • familial tooth agenesis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for STX18-AS1

genes like me logo Genes that share disorders with STX18-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for STX18-AS1 Gene

Publications for STX18-AS1 Gene

  1. Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16. (PMID: 23708191) Cordell HJ … Keavney BD (Nature genetics 2013) 2 3 54
  2. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). (PMID: 22952603) Hart AB … Palmer AA (PloS one 2012) 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for STX18-AS1 Gene

Sources for STX18-AS1 Gene