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Aliases for STX18-AS1 Gene

Subcategory (RNA class) for STX18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STX18-AS1 Gene

  • STX18 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for STX18-AS1 Gene

Summaries for STX18-AS1 Gene

GeneCards Summary for STX18-AS1 Gene

STX18-AS1 (STX18 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STX18-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STX18-AS1 Gene

Genomics for STX18-AS1 Gene

GeneHancer (GH) Regulatory Elements for STX18-AS1 Gene

Promoters and enhancers for STX18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I004540 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 574 -0.3 -268 2.7 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 STX18-AS1 STX18 TMEM128 FAM86EP NSG1 ZBTB49 RPS7P15
GH04I003765 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 11.3 -776.2 -776196 1.7 RING1 CTCF SAP130 ARID4B ZNF48 ZEB1 HIC1 ZNF335 ZFHX2 CTBP1 ADRA2C NOP14-AS1 STX18-AS1 ZBTB49 STX18 ENSG00000250986
GH04I004852 Enhancer 0.9 Ensembl ENCODE 11.3 +311.0 310976 1.2 HDAC1 RING1 CTCF L3MBTL2 SUZ12 ETV1 NRF1 ZBTB11 ZBTB40 GABPA STX18-AS1 ZBTB49 STX18 LINC01396 MSX1
GH04I004692 Enhancer 0.9 ENCODE 7.9 +152.2 152225 4.1 FOXA2 ARID4B YBX1 ZNF48 ETS1 ZNF143 SP5 KAT8 MIER3 RCOR2 STX18-AS1 GC04M004686 LOC101928279
GH04I003767 Enhancer 0.5 ENCODE 11.3 -774.9 -774912 0.2 CTCF RING1 MBD1 ZBTB33 ZBTB26 EZH2 ADRA2C NOP14-AS1 STX18-AS1 ZBTB49 STX18 GC04P003863
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STX18-AS1 Gene

Genomic Locations for STX18-AS1 Gene
chr4:4,542,131-4,710,938
(GRCh38/hg38)
Size:
168,808 bases
Orientation:
Plus strand
chr4:4,543,858-4,712,665
(GRCh37/hg19)

Genomic View for STX18-AS1 Gene

Genes around STX18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STX18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STX18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STX18-AS1 Gene

Proteins for STX18-AS1 Gene

Post-translational modifications for STX18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STX18-AS1 Gene

Domains & Families for STX18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STX18-AS1 Gene

Function for STX18-AS1 Gene

Phenotypes From GWAS Catalog for STX18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STX18-AS1 Gene

Localization for STX18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STX18-AS1 Gene

Pathways & Interactions for STX18-AS1 Gene

SuperPathways for STX18-AS1 Gene

No Data Available

Interacting Proteins for STX18-AS1 Gene

Gene Ontology (GO) - Biological Process for STX18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STX18-AS1 Gene

Drugs & Compounds for STX18-AS1 Gene

No Compound Related Data Available

Transcripts for STX18-AS1 Gene

mRNA/cDNA for STX18-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STX18-AS1 Gene

No ASD Table

Relevant External Links for STX18-AS1 Gene

GeneLoc Exon Structure for
STX18-AS1
ECgene alternative splicing isoforms for
STX18-AS1

Expression for STX18-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STX18-AS1 Gene

genes like me logo Genes that share expression patterns with STX18-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STX18-AS1 Gene

Orthologs for STX18-AS1 Gene

Evolution for STX18-AS1 Gene

ENSEMBL:
Gene Tree for STX18-AS1 (if available)
TreeFam:
Gene Tree for STX18-AS1 (if available)

No data available for Orthologs for STX18-AS1 Gene

Paralogs for STX18-AS1 Gene

No data available for Paralogs for STX18-AS1 Gene

Variants for STX18-AS1 Gene

Sequence variations from dbSNP and Humsavar for STX18-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs10000106 -- 4,686,171(+) G/C intron_variant
rs1000019231 -- 4,704,405(+) T/G intron_variant
rs1000024380 -- 4,654,773(+) A/G intron_variant
rs1000036579 -- 4,565,890(+) A/C intron_variant
rs1000038921 -- 4,625,518(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STX18-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829843 CNV loss 17160897
nsv821107 CNV duplication 20802225
nsv521279 CNV loss 19592680
nsv292566 CNV deletion 16902084
nsv1153463 CNV deletion 26484159
nsv1117055 CNV deletion 24896259
nsv1007737 CNV gain 25217958
esv3599465 CNV loss 21293372
esv3599463 CNV loss 21293372
esv34196 OTHER inversion 12058347
esv2726968 CNV deletion 23290073
esv2659553 CNV deletion 23128226
esv2547368 CNV deletion 19546169
esv21817 CNV loss 19812545
esv2144946 CNV deletion 18987734

Additional Variant Information for STX18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STX18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STX18-AS1 Gene

Disorders for STX18-AS1 Gene

Additional Disease Information for STX18-AS1

No disorders were found for STX18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STX18-AS1 Gene

Publications for STX18-AS1 Gene

  1. Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16. (PMID: 23708191) Cordell HJ … Keavney BD (Nature genetics 2013) 2 3 58
  2. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). (PMID: 22952603) Hart AB … Palmer AA (PloS one 2012) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for STX18-AS1 Gene

Sources for STX18-AS1 Gene

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