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Aliases for STRCP1 Gene

Aliases for STRCP1 Gene

  • Stereocilin Pseudogene 1 2 3 4 5
  • STRCP 3 4
  • Stereocilin Pseudogene 2

External Ids for STRCP1 Gene

Previous HGNC Symbols for STRCP1 Gene

  • STRCP

Previous GeneCards Identifiers for STRCP1 Gene

  • GC15M043991
  • GC15M043893

Summaries for STRCP1 Gene

GeneCards Summary for STRCP1 Gene

STRCP1 (Stereocilin Pseudogene 1) is a Pseudogene.

Additional gene information for STRCP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STRCP1 Gene

Genomics for STRCP1 Gene

GeneHancer (GH) Regulatory Elements for STRCP1 Gene

Promoters and enhancers for STRCP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I043745 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 17.8 -28.6 -28639 2.6 HDGF ARID4B SIN3A DMAP1 ZNF2 POLR2B ZNF143 SP3 SP5 NFYC PDIA3 CATSPER2P1 STRCP1 CTDSPL2 WDR76 MFAP1 SPG11 LCMT2 ELL3 ZSCAN29
GH15I043808 Enhancer 0.8 ENCODE 18.7 -90.9 -90906 2.2 HDGF PKNOX1 FOXA2 BACH1 EBF1 BMI1 ZNF207 ATF7 IKZF2 RUNX3 ADAL STRCP1 CATSPER2 SERINC4 MFAP1
GH15I043328 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 6.6 +388.1 388076 3 PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ADAL LCMT2 LRRC57 WDR76 RPS3AP47 CDAN1 STRCP1 TGM7
GH15I043791 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 5 -78.2 -78233 10.5 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC MEF2D GC15M043788 GC15P043795 HYPK PIR54305 SERINC4 SERF2 SPG11 CTDSPL2 ENSG00000259563 RPS3AP47
GH15I044192 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 5.2 -476.0 -476012 3.4 PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B GLIS2 ZNF213 ZNF143 KLF7 FRMD5 ZSCAN29 CTDSPL2 MFAP1 CATSPER2 STRCP1 ADAL GC15P044099
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STRCP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STRCP1 Gene

Genomic Locations for STRCP1 Gene
chr15:43,699,379-43,718,262
(GRCh38/hg38)
Size:
18,884 bases
Orientation:
Minus strand
chr15:43,991,577-44,010,460
(GRCh37/hg19)

Genomic View for STRCP1 Gene

Genes around STRCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STRCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STRCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STRCP1 Gene

Proteins for STRCP1 Gene

  • Protein details for STRCP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGW2-STRCL_HUMAN
    Recommended name:
    Putative stereocilin-like protein
    Protein Accession:
    A6NGW2

    Protein attributes for STRCP1 Gene

    Size:
    1772 amino acids
    Molecular mass:
    192437 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STRCP1 Gene

Post-translational modifications for STRCP1 Gene

  • Glycosylation at isoforms=65, posLast=427427, posLast=476476, and posLast=565565

No data available for DME Specific Peptides for STRCP1 Gene

Domains & Families for STRCP1 Gene

Protein Domains for STRCP1 Gene

Suggested Antigen Peptide Sequences for STRCP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGW2

UniProtKB/Swiss-Prot:

STRCL_HUMAN :
  • Belongs to the stereocilin family.
Family:
  • Belongs to the stereocilin family.
genes like me logo Genes that share domains with STRCP1: view

No data available for Gene Families for STRCP1 Gene

Function for STRCP1 Gene

Phenotypes From GWAS Catalog for STRCP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STRCP1 Gene

Localization for STRCP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STRCP1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for STRCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0009986 cell surface IBA --
GO:0032426 stereocilium tip IBA --
GO:0060091 kinocilium IBA --
genes like me logo Genes that share ontologies with STRCP1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for STRCP1 Gene

Pathways & Interactions for STRCP1 Gene

SuperPathways for STRCP1 Gene

No Data Available

Interacting Proteins for STRCP1 Gene

Gene Ontology (GO) - Biological Process for STRCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007160 cell-matrix adhesion IBA --
GO:0007605 sensory perception of sound IBA --
genes like me logo Genes that share ontologies with STRCP1: view

No data available for Pathways by source and SIGNOR curated interactions for STRCP1 Gene

Drugs & Compounds for STRCP1 Gene

No Compound Related Data Available

Transcripts for STRCP1 Gene

mRNA/cDNA for STRCP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STRCP1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^
SP1: - - - - - -
SP2:
SP3: -
SP4: -
SP5: - - -
SP6:
SP7: - - -
SP8: -
SP9:
SP10:

ExUns: 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for STRCP1 Gene

GeneLoc Exon Structure for
STRCP1
ECgene alternative splicing isoforms for
STRCP1

Expression for STRCP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STRCP1 Gene

mRNA differential expression in normal tissues according to GTEx for STRCP1 Gene

This gene is overexpressed in Brain - Cerebellum (x7.9) and Brain - Cerebellar Hemisphere (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of STRCP1 Gene:

STRCP1
genes like me logo Genes that share expression patterns with STRCP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STRCP1 Gene

Orthologs for STRCP1 Gene

Evolution for STRCP1 Gene

ENSEMBL:
Gene Tree for STRCP1 (if available)
TreeFam:
Gene Tree for STRCP1 (if available)

No data available for Orthologs for STRCP1 Gene

Paralogs for STRCP1 Gene

(1) SIMAP similar genes for STRCP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STRCP1: view

No data available for Paralogs for STRCP1 Gene

Variants for STRCP1 Gene

Additional Variant Information for STRCP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STRCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for STRCP1 Gene

Disorders for STRCP1 Gene

Additional Disease Information for STRCP1

No disorders were found for STRCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STRCP1 Gene

Publications for STRCP1 Gene

  1. CATSPER2, a human autosomal nonsyndromic male infertility gene. (PMID: 12825070) Avidan N … Beckmann JS (European journal of human genetics : EJHG 2003) 2 3 4 58
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for STRCP1 Gene

Sources for STRCP1 Gene

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