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Aliases for STEAP2-AS1 Gene

Subcategory (RNA class) for STEAP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STEAP2-AS1 Gene

  • STEAP2 Antisense RNA 1 2 3 5
  • STEAP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for STEAP2-AS1 Gene

Previous GeneCards Identifiers for STEAP2-AS1 Gene

  • GC07M089512

Summaries for STEAP2-AS1 Gene

GeneCards Summary for STEAP2-AS1 Gene

STEAP2-AS1 (STEAP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STEAP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STEAP2-AS1 Gene

Genomics for STEAP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for STEAP2-AS1 Gene

Promoters and enhancers for STEAP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I090210 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 0.0 -12 2.3 HDGF FOXA2 ARID4B SIN3A ZNF2 YY1 ZNF143 SP3 SP5 ZHX2 STEAP2 STEAP2-AS1 STEAP1 GC07P090219
GH07I090213 Enhancer 0.7 Ensembl ENCODE dbSUPER 550.8 -1.6 -1566 0.4 ZNF148 STEAP2-AS1 STEAP2 CFAP69 ENSG00000207488 GC07P090219
GH07I090214 Promoter/Enhancer 0.7 EPDnew dbSUPER 0.8 -2.2 -2165 0.1 STEAP2 CFAP69 ENSG00000207488 STEAP2-AS1 GC07P090219
GH07I090153 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.2 +56.8 56792 2 HDGF PKNOX1 ATF1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 YY1 STEAP1 STEAP2 STEAP2-AS1
GH07I090177 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +32.2 32188 3.2 ELF3 FOXA2 SMAD1 BMI1 BATF IRF4 ATF7 FOS IKZF2 RUNX3 STEAP1 GTPBP10 STEAP2 STEAP2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STEAP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STEAP2-AS1 Gene

Genomic Locations for STEAP2-AS1 Gene
chr7:89,882,353-90,211,635
(GRCh38/hg38)
Size:
329,283 bases
Orientation:
Minus strand
chr7:89,511,667-89,840,949
(GRCh37/hg19)

Genomic View for STEAP2-AS1 Gene

Genes around STEAP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STEAP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STEAP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STEAP2-AS1 Gene

Proteins for STEAP2-AS1 Gene

Post-translational modifications for STEAP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STEAP2-AS1 Gene

Domains & Families for STEAP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STEAP2-AS1 Gene

Function for STEAP2-AS1 Gene

Phenotypes From GWAS Catalog for STEAP2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STEAP2-AS1 Gene

Localization for STEAP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STEAP2-AS1 Gene

Pathways & Interactions for STEAP2-AS1 Gene

SuperPathways for STEAP2-AS1 Gene

No Data Available

Interacting Proteins for STEAP2-AS1 Gene

Gene Ontology (GO) - Biological Process for STEAP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STEAP2-AS1 Gene

Drugs & Compounds for STEAP2-AS1 Gene

No Compound Related Data Available

Transcripts for STEAP2-AS1 Gene

mRNA/cDNA for STEAP2-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STEAP2-AS1 Gene

No ASD Table

Relevant External Links for STEAP2-AS1 Gene

GeneLoc Exon Structure for
STEAP2-AS1
ECgene alternative splicing isoforms for
STEAP2-AS1

Expression for STEAP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STEAP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for STEAP2-AS1 Gene

This gene is overexpressed in Prostate (x8.2).
genes like me logo Genes that share expression patterns with STEAP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STEAP2-AS1 Gene

Orthologs for STEAP2-AS1 Gene

Evolution for STEAP2-AS1 Gene

ENSEMBL:
Gene Tree for STEAP2-AS1 (if available)
TreeFam:
Gene Tree for STEAP2-AS1 (if available)

No data available for Orthologs for STEAP2-AS1 Gene

Paralogs for STEAP2-AS1 Gene

No data available for Paralogs for STEAP2-AS1 Gene

Variants for STEAP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for STEAP2-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000003292 -- 90,191,017(-) C/A intron_variant
rs1000004526 -- 89,947,362(-) T/A intron_variant
rs1000005642 -- 89,991,639(-) A/C intron_variant
rs1000010608 -- 90,044,238(-) A/G intron_variant
rs1000055868 -- 90,079,711(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STEAP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv981547 CNV duplication 23825009
nsv970904 CNV duplication 23825009
nsv970903 CNV duplication 23825009
nsv970550 CNV duplication 23825009
nsv970549 CNV duplication 23825009
nsv966857 CNV duplication 23825009
nsv966856 CNV duplication 23825009
nsv957006 CNV deletion 24416366
nsv955998 CNV deletion 24416366
nsv955995 CNV deletion 24416366
nsv951371 CNV deletion 24416366
nsv831058 CNV gain 17160897
nsv824206 CNV loss 20364138
nsv824205 CNV loss 20364138
nsv824204 CNV loss 20364138
nsv824203 CNV loss 20364138
nsv820812 CNV deletion 20802225
nsv819141 CNV gain 19587683
nsv818536 CNV gain 17921354
nsv8174 CNV gain 18304495
nsv8173 CNV gain 18304495
nsv607778 CNV loss 21841781
nsv607777 CNV loss 21841781
nsv607776 CNV gain 21841781
nsv607753 CNV loss 21841781
nsv607752 CNV loss 21841781
nsv607750 CNV loss 21841781
nsv525531 CNV loss 19592680
nsv522933 CNV gain 19592680
nsv520652 CNV loss 19592680
nsv517113 CNV loss 19592680
nsv515997 CNV gain+loss 19592680
nsv511978 CNV loss 21212237
nsv511369 CNV loss 21212237
nsv510097 OTHER sequence alteration 20534489
nsv510096 OTHER sequence alteration 20534489
nsv508465 CNV deletion 20534489
nsv479189 CNV novel sequence insertion 20440878
nsv475326 CNV novel sequence insertion 20440878
nsv464626 CNV gain 19166990
nsv437989 CNV loss 16468122
nsv366573 CNV deletion 16902084
nsv1161583 CNV deletion 26073780
nsv1150858 CNV deletion 26484159
nsv1148975 CNV deletion 26484159
nsv1126802 CNV deletion 24896259
nsv1075042 CNV deletion 25765185
nsv1034468 CNV gain 25217958
nsv1024509 CNV loss 25217958
nsv1024247 CNV gain 25217958
nsv1018568 CNV loss 25217958
esv9367 CNV loss 19470904
esv8946 CNV loss 19470904
esv6671 CNV loss 19470904
esv3962 CNV loss 18987735
esv3848 CNV loss 18987735
esv3614103 CNV loss 21293372
esv3614102 CNV loss 21293372
esv3614101 CNV gain 21293372
esv3614100 CNV loss 21293372
esv3614099 CNV gain 21293372
esv3614098 CNV loss 21293372
esv3614097 CNV loss 21293372
esv3614095 CNV loss 21293372
esv3614094 CNV loss 21293372
esv3614093 CNV loss 21293372
esv3614092 CNV loss 21293372
esv3614091 CNV loss 21293372
esv3614089 CNV gain 21293372
esv3576403 CNV gain 25503493
esv3576402 CNV gain 25503493
esv3576400 CNV gain 25503493
esv3571976 CNV loss 25503493
esv3571974 CNV loss 25503493
esv3542063 CNV deletion 23714750
esv3542061 CNV deletion 23714750
esv3542060 CNV deletion 23714750
esv3542059 CNV deletion 23714750
esv3278717 CNV deletion 24192839
esv3278606 CNV deletion 24192839
esv3278495 CNV deletion 24192839
esv28689 CNV gain 19812545
esv2762685 CNV loss 21179565
esv2761348 CNV loss 21179565
esv2759545 CNV gain 17122850
esv2752191 CNV loss 17911159
esv2752188 CNV gain 17911159
esv2734804 CNV deletion 23290073
esv2734803 CNV deletion 23290073
esv2734802 CNV deletion 23290073
esv2734801 CNV deletion 23290073
esv2734800 CNV deletion 23290073
esv26892 CNV loss 19812545
esv2674062 CNV deletion 23128226
esv2668491 CNV deletion 23128226
esv2665357 CNV deletion 23128226
esv2657111 CNV deletion 23128226
esv2622947 CNV deletion 19546169
esv2549267 CNV deletion 19546169
esv24241 CNV loss 19812545
esv2422434 CNV deletion 17116639
esv2422216 CNV duplication 17116639
esv2395540 CNV deletion 18987734
esv1975014 CNV deletion 18987734
esv1756690 CNV deletion 17803354
esv1732751 CNV deletion 17803354
esv1722089 CNV insertion 17803354
esv1644512 CNV insertion 17803354
esv1598664 CNV insertion 17803354
esv1006753 CNV deletion 20482838
esv1006022 CNV deletion 20482838
esv1001090 CNV deletion 20482838
dgv825n27 CNV loss 19166990
dgv6531n100 CNV gain 25217958
dgv6530n100 CNV loss 25217958
dgv6529n100 CNV gain 25217958
dgv6528n100 CNV loss 25217958
dgv6526n100 CNV gain 25217958
dgv6525n100 CNV gain 25217958
dgv423n21 CNV loss 19592680
dgv3613n106 CNV deletion 24896259
dgv3612n106 CNV deletion 24896259
dgv3611n106 CNV deletion 24896259
dgv1933e212 CNV loss 25503493
dgv11497n54 CNV loss 21841781
dgv11496n54 CNV loss 21841781
dgv11495n54 CNV loss 21841781
dgv11494n54 CNV loss 21841781
dgv11493n54 CNV gain 21841781

Additional Variant Information for STEAP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STEAP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STEAP2-AS1 Gene

Disorders for STEAP2-AS1 Gene

Additional Disease Information for STEAP2-AS1

No disorders were found for STEAP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STEAP2-AS1 Gene

Publications for STEAP2-AS1 Gene

  1. A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus. (PMID: 25130324) Cai DC … Hagoort P (Genes, brain, and behavior 2014) 3 58
  2. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PMID: 23870195) Wojczynski MK … Reilly MP (BMC medical genetics 2013) 3 58
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for STEAP2-AS1 Gene

Sources for STEAP2-AS1 Gene

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