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Aliases for STARD6 Gene

Aliases for STARD6 Gene

  • StAR Related Lipid Transfer Domain Containing 6 2 3 5
  • START Domain-Containing Protein 6 3 4
  • START Domain Containing 6 2 3
  • StAR-Related Lipid Transfer (START) Domain Containing 6 3
  • StAR-Related Lipid Transfer Protein 6 3
  • StARD6 4

External Ids for STARD6 Gene

Previous GeneCards Identifiers for STARD6 Gene

  • GC18M052021
  • GC18M051786
  • GC18M050103
  • GC18M050105
  • GC18M048706
  • GC18M051850

Summaries for STARD6 Gene

Entrez Gene Summary for STARD6 Gene

  • Cholesterol homeostasis is regulated, at least in part, by sterol regulatory element (SRE)-binding proteins (e.g., SREBP1; MIM 184756) and by liver X receptors (e.g., LXRA; MIM 602423). Upon sterol depletion, LXRs are inactive and SREBPs are cleaved, after which they bind promoter SREs and activate genes involved in cholesterol biosynthesis and uptake. Sterol transport is mediated by vesicles or by soluble protein carriers, such as steroidogenic acute regulatory protein (STAR; MIM 600617). STAR is homologous to a family of proteins containing a 200- to 210-amino acid STAR-related lipid transfer (START) domain, including STARD6 (Soccio et al., 2002 [PubMed 12011452]).[supplied by OMIM, Mar 2008]

GeneCards Summary for STARD6 Gene

STARD6 (StAR Related Lipid Transfer Domain Containing 6) is a Protein Coding gene. Among its related pathways are Metabolism and Metabolism of steroid hormones. Gene Ontology (GO) annotations related to this gene include lipid binding. An important paralog of this gene is STARD5.

UniProtKB/Swiss-Prot for STARD6 Gene

  • May be involved in the intracellular transport of sterols or other lipids. May bind cholesterol or other sterols (By similarity).

Additional gene information for STARD6 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD6 Gene

Genomics for STARD6 Gene

GeneHancer (GH) Regulatory Elements for STARD6 Gene

Promoters and enhancers for STARD6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J054357 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.4 -388 2.5 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A ZNF2 IRF4 YY1 POLR2B C18orf54 STARD6 POLI MBD2 PIR60000
GH18J054250 Enhancer 1.1 Ensembl ENCODE 10 +105.1 105144 5.5 FOXA2 MLX ARID4B FEZF1 DMAP1 IRF4 ETS1 YY1 ATF7 RUNX3 POLI C18orf54 MBD2 SNORA37 STARD6 GC18P054260
GH18J054246 Enhancer 1.1 Ensembl ENCODE dbSUPER 10 +110.6 110605 2.6 FOXA2 EBF1 KMT2B ZNF143 ATF7 IKZF2 RUNX3 SOX5 ZNF687 NANOG POLI MBD2 SNORA37 C18orf54 STARD6 ENSG00000264296 GC18P054260
GH18J054284 Enhancer 1 Ensembl ENCODE 10.3 +72.8 72820 2.3 PKNOX1 SMAD1 STAT5A BMI1 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 POLI MBD2 SNORA37 C18orf54 STARD6 GC18M054269 ENSG00000277324
GH18J054209 Enhancer 1 Ensembl ENCODE 10 +148.3 148309 1.1 PKNOX1 SMAD1 STAT5A BMI1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 POLI C18orf54 STARD6 GC18M054223 GC18M054224 SNORA37 MBD2 ENSG00000264296
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STARD6 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STARD6 gene promoter:

Genomic Locations for STARD6 Gene

Genomic Locations for STARD6 Gene
chr18:54,324,358-54,357,964
(GRCh38/hg38)
Size:
33,607 bases
Orientation:
Minus strand
chr18:51,850,728-51,884,334
(GRCh37/hg19)

Genomic View for STARD6 Gene

Genes around STARD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD6 Gene

Proteins for STARD6 Gene

  • Protein details for STARD6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59095-STAR6_HUMAN
    Recommended name:
    StAR-related lipid transfer protein 6
    Protein Accession:
    P59095

    Protein attributes for STARD6 Gene

    Size:
    220 amino acids
    Molecular mass:
    25022 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for STARD6 Gene

neXtProt entry for STARD6 Gene

Post-translational modifications for STARD6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for STARD6 Gene

No data available for DME Specific Peptides for STARD6 Gene

Domains & Families for STARD6 Gene

Gene Families for STARD6 Gene

Protein Domains for STARD6 Gene

Suggested Antigen Peptide Sequences for STARD6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with STARD6: view

No data available for UniProtKB/Swiss-Prot for STARD6 Gene

Function for STARD6 Gene

Molecular function for STARD6 Gene

UniProtKB/Swiss-Prot Function:
May be involved in the intracellular transport of sterols or other lipids. May bind cholesterol or other sterols (By similarity).

Gene Ontology (GO) - Molecular Function for STARD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008289 lipid binding IEA,IBA --
GO:0015485 cholesterol binding IBA --
genes like me logo Genes that share ontologies with STARD6: view
genes like me logo Genes that share phenotypes with STARD6: view

Animal Model Products

miRNA for STARD6 Gene

miRTarBase miRNAs that target STARD6

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STARD6 Gene

Localization for STARD6 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STARD6 gene
Compartment Confidence
mitochondrion 4
nucleus 2
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for STARD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IBA --
genes like me logo Genes that share ontologies with STARD6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for STARD6 Gene

Pathways & Interactions for STARD6 Gene

genes like me logo Genes that share pathways with STARD6: view

Pathways by source for STARD6 Gene

Gene Ontology (GO) - Biological Process for STARD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006869 lipid transport IEA --
genes like me logo Genes that share ontologies with STARD6: view

No data available for SIGNOR curated interactions for STARD6 Gene

Drugs & Compounds for STARD6 Gene

No Compound Related Data Available

Transcripts for STARD6 Gene

mRNA/cDNA for STARD6 Gene

(10) Selected AceView cDNA sequences:
(1) Additional mRNA sequences :
(4) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STARD6 Gene

StAR-related lipid transfer (START) domain containing 6:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STARD6 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6
SP1: -
SP2: -

Relevant External Links for STARD6 Gene

GeneLoc Exon Structure for
STARD6
ECgene alternative splicing isoforms for
STARD6

Expression for STARD6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STARD6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for STARD6 Gene

This gene is overexpressed in Testis (x38.7).

Protein differential expression in normal tissues from HIPED for STARD6 Gene

This gene is overexpressed in Fetal gut (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STARD6 Gene



Protein tissue co-expression partners for STARD6 Gene

NURSA nuclear receptor signaling pathways regulating expression of STARD6 Gene:

STARD6

SOURCE GeneReport for Unigene cluster for STARD6 Gene:

Hs.438779
genes like me logo Genes that share expression patterns with STARD6: view

No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STARD6 Gene

Orthologs for STARD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for STARD6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STARD6 34 33
  • 99.09 (n)
OneToOne
dog
(Canis familiaris)
Mammalia STARD6 34 33
  • 87.42 (n)
OneToOne
cow
(Bos Taurus)
Mammalia STARD6 34 33
  • 85.55 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Stard6 16 34 33
  • 81.43 (n)
rat
(Rattus norvegicus)
Mammalia Stard6 33
  • 80.52 (n)
oppossum
(Monodelphis domestica)
Mammalia STARD6 34
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia STARD6 34
  • 59 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia STARD6 34
  • 41 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100496774 33
  • 59.97 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 28 (a)
ManyToMany
-- 34
  • 26 (a)
ManyToMany
Species where no ortholog for STARD6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for STARD6 Gene

ENSEMBL:
Gene Tree for STARD6 (if available)
TreeFam:
Gene Tree for STARD6 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for STARD6: view image

Paralogs for STARD6 Gene

Paralogs for STARD6 Gene

(3) SIMAP similar genes for STARD6 Gene using alignment to 3 proteins:

  • STAR6_HUMAN
  • J3QLL9_HUMAN
  • J3QRT9_HUMAN
genes like me logo Genes that share paralogs with STARD6: view

Variants for STARD6 Gene

Sequence variations from dbSNP and Humsavar for STARD6 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000024996 -- 54,331,851(-) G/T coding_sequence_variant, missense_variant
rs1000067351 -- 54,338,475(-) C/T intron_variant
rs1000086588 -- 54,330,181(-) C/G intron_variant
rs1000160433 -- 54,357,184(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000259451 -- 54,339,358(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STARD6 Gene

Variant ID Type Subtype PubMed ID
esv2670481 CNV deletion 23128226
esv2717126 CNV deletion 23290073
esv2717127 CNV deletion 23290073
esv3555418 CNV deletion 23714750
esv3642579 CNV loss 21293372
nsv962973 CNV deletion 23825009

Variation tolerance for STARD6 Gene

Residual Variation Intolerance Score: 82.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.69; 66.04% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for STARD6 Gene

Human Gene Mutation Database (HGMD)
STARD6
SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STARD6 Gene

Disorders for STARD6 Gene

Additional Disease Information for STARD6

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for STARD6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD6 Gene

Publications for STARD6 Gene

  1. The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. (PMID: 12011452) Soccio RE … Breslow JL (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 4 58
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
  3. Genetic association of STARD6 polymorphisms with Alzheimer's disease in a Korean population. (PMID: 27288785) Kim YJ … Park JK (Journal of the neurological sciences 2016) 3 58
  4. STARD6 on steroids: solution structure, multiple timescale backbone dynamics and ligand binding mechanism. (PMID: 27340016) Létourneau D … Lavigne P (Scientific reports 2016) 3 58
  5. The StarD4 subfamily of steroidogenic acute regulatory-related lipid transfer (START) domain proteins: new players in cholesterol metabolism. (PMID: 24440759) Calderon-Dominguez M … Rodríguez-Agudo D (The international journal of biochemistry & cell biology 2014) 3 58

Products for STARD6 Gene

Sources for STARD6 Gene

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