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Aliases for STARD13-AS Gene

Subcategory (RNA class) for STARD13-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for STARD13-AS Gene

  • STARD13 Antisense RNA 2 3 5
  • STARD13 Antisense RNA 2 (Non-Protein Coding) 2 3
  • STARD13 Antisense RNA 2 2
  • STARD13-AS2 3

External Ids for STARD13-AS Gene

Previous HGNC Symbols for STARD13-AS Gene

  • STARD13-AS2

Previous GeneCards Identifiers for STARD13-AS Gene

  • GC13P033853
  • GC13P033271

Summaries for STARD13-AS Gene

GeneCards Summary for STARD13-AS Gene

STARD13-AS (STARD13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for STARD13-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STARD13-AS Gene

Genomics for STARD13-AS Gene

GeneHancer (GH) Regulatory Elements for STARD13-AS Gene

Promoters and enhancers for STARD13-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I033178 Enhancer 0.9 ENCODE dbSUPER 550.8 -0.4 -406 3.5 PKNOX1 USF1 MAX FEZF1 RARA GATA3 POLR2A RXRA FOXA1 NR2F2 STARD13-AS STARD13-IT1 STARD13
GH13I033270 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.7 +98.2 98179 16.6 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 YY1 SLC30A9 STARD13 N4BP2L2 STARD13-AS RFC3 KL LINC02344
GH13I033255 Enhancer 1.4 Ensembl ENCODE dbSUPER 23.1 +81.5 81526 12.6 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 TCF12 FOS RXRA SP5 STARD13-AS STARD13 KL LINC02344
GH13I033202 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 +25.5 25462 7.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 RAD21 RARA HSF1 SCRT2 ZNF143 STARD13 STARD13-AS KL LINC02344
GH13I033247 Enhancer 1.1 Ensembl ENCODE dbSUPER 16.9 +70.7 70734 6.8 CTCF PKNOX1 JUN MAX BATF POLR2A ATF7 RCOR1 FOSL2 FOS STARD13-AS STARD13 KL LINC02344
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STARD13-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for STARD13-AS Gene

Genomic Locations for STARD13-AS Gene
chr13:33,180,401-33,281,584
(GRCh38/hg38)
Size:
101,184 bases
Orientation:
Plus strand
chr13:33,845,516-33,855,471
(GRCh37/hg19)

Genomic View for STARD13-AS Gene

Genes around STARD13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STARD13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STARD13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STARD13-AS Gene

Proteins for STARD13-AS Gene

Post-translational modifications for STARD13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for STARD13-AS Gene

Domains & Families for STARD13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STARD13-AS Gene

Function for STARD13-AS Gene

Phenotypes From GWAS Catalog for STARD13-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STARD13-AS Gene

Localization for STARD13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STARD13-AS Gene

Pathways & Interactions for STARD13-AS Gene

SuperPathways for STARD13-AS Gene

No Data Available

Interacting Proteins for STARD13-AS Gene

Gene Ontology (GO) - Biological Process for STARD13-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STARD13-AS Gene

Drugs & Compounds for STARD13-AS Gene

No Compound Related Data Available

Transcripts for STARD13-AS Gene

mRNA/cDNA for STARD13-AS Gene

(2) Additional mRNA sequences :
(48) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STARD13-AS Gene

STARD13 antisense RNA:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STARD13-AS Gene

No ASD Table

Relevant External Links for STARD13-AS Gene

GeneLoc Exon Structure for
STARD13-AS
ECgene alternative splicing isoforms for
STARD13-AS

Expression for STARD13-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STARD13-AS Gene

mRNA differential expression in normal tissues according to GTEx for STARD13-AS Gene

This gene is overexpressed in Testis (x25.0).

SOURCE GeneReport for Unigene cluster for STARD13-AS Gene:

Hs.662433
genes like me logo Genes that share expression patterns with STARD13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STARD13-AS Gene

Orthologs for STARD13-AS Gene

Evolution for STARD13-AS Gene

ENSEMBL:
Gene Tree for STARD13-AS (if available)
TreeFam:
Gene Tree for STARD13-AS (if available)

No data available for Orthologs for STARD13-AS Gene

Paralogs for STARD13-AS Gene

No data available for Paralogs for STARD13-AS Gene

Variants for STARD13-AS Gene

Sequence variations from dbSNP and Humsavar for STARD13-AS Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000265166 -- 33,275,768(+) T/C upstream_transcript_variant
rs1000294040 -- 33,281,802(+) G/T downstream_transcript_variant
rs1000597625 -- 33,277,189(+) T/A upstream_transcript_variant
rs1001889811 -- 33,279,852(+) C/A intron_variant
rs1002004227 -- 33,279,599(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for STARD13-AS Gene

Variant ID Type Subtype PubMed ID
nsv519343 CNV loss 19592680

Additional Variant Information for STARD13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STARD13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STARD13-AS Gene

Disorders for STARD13-AS Gene

Additional Disease Information for STARD13-AS

No disorders were found for STARD13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STARD13-AS Gene

Publications for STARD13-AS Gene

No publications were found for STARD13-AS Gene.

Products for STARD13-AS Gene

Sources for STARD13-AS Gene

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