Aliases for STAM-DT Gene

Data sources for STAM-DT Gene:

Subcategory (RNA class) for STAM-DT Gene

lncRNA

Aliases for STAM-DT Gene

External Ids for STAM-DT Gene

Previous HGNC Symbols for STAM-DT Gene

  • STAM-AS1

Summaries for STAM-DT Gene

GeneCards Summary for STAM-DT Gene

STAM-DT (STAM Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for STAM-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for STAM-DT Gene

Genomics for STAM-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for STAM-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J017642 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -3.0 -2984 9.7 TBP SP1 FEZF1 CEBPA MNT IKZF1 SMAD5 ZNF217 POLR2A ZIC2 STAM STAM-DT HACD1 NONHSAG005333.2 lnc-STAM-1 HSALNG0076466 TMEM236
GH10J017058 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 4.6 +582.5 582527 6.6 FEZF1 ZEB1 ZNF610 ZNF513 ZNF623 REST FOXA2 ZNF639 ZNF843 SP2 CUBN TRDMT1 STAM-DT ENSG00000229190 piR-43103-008 HSALNG0076422 HSALNG0076424 RSU1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around STAM-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for STAM-DT Gene

Latest Assembly
chr10:17,641,283-17,644,090
(GRCh38/hg38)
Size:
2,808 bases
Orientation:
Minus strand

Previous Assembly
chr10:17,683,283-17,685,917
(GRCh37/hg19 by Entrez Gene)
Size:
2,635 bases
Orientation:
Minus strand

chr10:17,683,283-17,685,877
(GRCh37/hg19 by Ensembl)
Size:
2,595 bases
Orientation:
Minus strand

Genomic View for STAM-DT Gene

Genes around STAM-DT on UCSC Golden Path with GeneCards custom track
STAM-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
STAM-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAM-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAM-DT Gene

Proteins for STAM-DT Gene

Post-translational modifications for STAM-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAM-DT Gene

Domains & Families for STAM-DT Gene

Gene Families for STAM-DT Gene

genes like me logo Genes that share domains with STAM-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for STAM-DT Gene

Function for STAM-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAM-DT Gene

Localization for STAM-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAM-DT Gene

Pathways & Interactions for STAM-DT Gene

PathCards logo

SuperPathways for STAM-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for STAM-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for STAM-DT Gene

Drugs & Compounds for STAM-DT Gene

No Compound Related Data Available

Transcripts for STAM-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for STAM-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004989B7_9606 lncRNA 2595 3

Ensembl: ENST00000563601 (view in UCSC) ,

LNCipedia: STAM-AS1:2,

NONCODE: NONHSAT011627.2,

URS000075C83C_9606 lncRNA 2635 2

RefSeq: NR_110370,

LNCipedia: STAM-AS1:1,

URS0000D5B4FB_9606 lncRNA 552 2

LncBook: HSALNT0159577,

LNCipedia: STAM-AS1:4,

URS0001BD4EDE_9606 lncRNA 2805 1

LncBook: HSALNT0159575,

URS0000EB4A73_9606 lncRNA 2636 1

LncBook: HSALNT0289404,

STAM-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for STAM-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for STAM-DT Gene

No ASD Table

Relevant External Links for STAM-DT Gene

GeneLoc Exon Structure for
STAM-DT

Expression for STAM-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for STAM-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAM-DT Gene

Orthologs for STAM-DT Gene

Evolution for STAM-DT Gene

ENSEMBL:
Gene Tree for STAM-DT (if available)
TreeFam:
Gene Tree for STAM-DT (if available)

No data available for Orthologs for STAM-DT Gene

Paralogs for STAM-DT Gene

No data available for Paralogs for STAM-DT Gene

Variants for STAM-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for STAM-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for STAM-DT Gene

Variant ID Type Subtype PubMed ID
esv3622495 CNV loss 21293372

Additional Variant Information for STAM-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAM-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for STAM-DT Gene

Disorders for STAM-DT Gene

Additional Disease Information for STAM-DT

No disorders were found for STAM-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAM-DT Gene

Publications for STAM-DT Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for STAM-DT Gene

Sources for STAM-DT Gene