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Aliases for STAM-AS1 Gene

Subcategory (RNA class) for STAM-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for STAM-AS1 Gene

  • STAM Antisense RNA 1 (Head To Head) 2 3 5
  • Locus 3182 2 3
  • Locus3182 3

External Ids for STAM-AS1 Gene

ORGUL Members for STAM-AS1 Gene

Previous GeneCards Identifiers for STAM-AS1 Gene

  • GC10U901933

Summaries for STAM-AS1 Gene

GeneCards Summary for STAM-AS1 Gene

STAM-AS1 (STAM Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for STAM-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAM-AS1 Gene

Genomics for STAM-AS1 Gene

GeneHancer (GH) Regulatory Elements for STAM-AS1 Gene

Promoters and enhancers for STAM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I017058 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.6 +582.4 582355 6.6 FOXA2 ZNF133 SIN3A FEZF1 ZNF2 ZNF213 FOS ATF7 SP3 REST CUBN TRDMT1 STAM-AS1 LOC105376438 GC10P016843
GH10I017642 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.8 -3.2 -3237 9.6 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 STAM LOC105376438 HACD1 STAM-AS1 GC10P017641
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STAM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STAM-AS1 Gene

Genomic Locations for STAM-AS1 Gene
chr10:17,641,284-17,643,918
(GRCh38/hg38)
Size:
2,635 bases
Orientation:
Minus strand

Genomic View for STAM-AS1 Gene

Genes around STAM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAM-AS1 Gene

Proteins for STAM-AS1 Gene

Post-translational modifications for STAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAM-AS1 Gene

Domains & Families for STAM-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAM-AS1 Gene

Function for STAM-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAM-AS1 Gene

Localization for STAM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAM-AS1 Gene

Pathways & Interactions for STAM-AS1 Gene

SuperPathways for STAM-AS1 Gene

No Data Available

Interacting Proteins for STAM-AS1 Gene

Gene Ontology (GO) - Biological Process for STAM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAM-AS1 Gene

Drugs & Compounds for STAM-AS1 Gene

No Compound Related Data Available

Transcripts for STAM-AS1 Gene

mRNA/cDNA for STAM-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STAM-AS1 Gene

No ASD Table

Relevant External Links for STAM-AS1 Gene

GeneLoc Exon Structure for
STAM-AS1
ECgene alternative splicing isoforms for
STAM-AS1

Expression for STAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAM-AS1 Gene

genes like me logo Genes that share expression patterns with STAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAM-AS1 Gene

Orthologs for STAM-AS1 Gene

Evolution for STAM-AS1 Gene

ENSEMBL:
Gene Tree for STAM-AS1 (if available)
TreeFam:
Gene Tree for STAM-AS1 (if available)

No data available for Orthologs for STAM-AS1 Gene

Paralogs for STAM-AS1 Gene

No data available for Paralogs for STAM-AS1 Gene

Variants for STAM-AS1 Gene

Sequence variations from dbSNP and Humsavar for STAM-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000890869 -- 17,644,099(-) C/T upstream_transcript_variant
rs1002834976 -- 17,641,272(-) G/A downstream_transcript_variant
rs1004822452 -- 17,643,743(-) G/A non_coding_transcript_variant
rs1004855323 -- 17,643,612(-) G/T non_coding_transcript_variant
rs1005823514 -- 17,644,438(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for STAM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3622495 CNV loss 21293372

Additional Variant Information for STAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAM-AS1 Gene

Disorders for STAM-AS1 Gene

Additional Disease Information for STAM-AS1

No disorders were found for STAM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAM-AS1 Gene

Publications for STAM-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for STAM-AS1 Gene

Sources for STAM-AS1 Gene

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