Aliases for STAM-AS1 Gene

Subcategory (RNA class) for STAM-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for STAM-AS1 Gene

  • STAM Antisense RNA 1 (Head To Head) 2 3 5
  • Locus 3182 2 3
  • STAM-AS1 2 168
  • HSALNG0076463 167
  • NONHSAG005331 92
  • Locus3182 3

External Ids for STAM-AS1 Gene

Previous GeneCards Identifiers for STAM-AS1 Gene

  • GC10U901933

Summaries for STAM-AS1 Gene

GeneCards Summary for STAM-AS1 Gene

STAM-AS1 (STAM Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for STAM-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for STAM-AS1 Gene

Genomics for STAM-AS1 Gene

GeneHancer (GH) Regulatory Elements for STAM-AS1 Gene

Promoters and enhancers for STAM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J017058 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 4.6 +582.4 582355 6.6 ZSCAN5C JUND FOS ZNF639 ZNF10 REST ZNF623 ZNF510 SKI ATF2 CUBN TRDMT1 STAM-AS1 ENSG00000229190 piR-43103-008
GH10J017642 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.2 -3237 9.6 ZNF217 EP300 SIN3A TCF12 POLR2G SP1 GTF2E2 PHF8 TEAD4 ZNF639 STAM HACD1 ENSG00000240291 NONHSAG005333.2 STAM-AS1 lnc-STAM-1 ENSG00000229190
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around STAM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for STAM-AS1 Gene

Genomic Locations for STAM-AS1 Gene
chr10:17,641,283-17,643,918
(GRCh38/hg38)
Size:
2,636 bases
Orientation:
Minus strand

Genomic View for STAM-AS1 Gene

Genes around STAM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAM-AS1 Gene

Proteins for STAM-AS1 Gene

Post-translational modifications for STAM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAM-AS1 Gene

Domains & Families for STAM-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for STAM-AS1 Gene

Function for STAM-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAM-AS1 Gene

Localization for STAM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAM-AS1 Gene

Pathways & Interactions for STAM-AS1 Gene

PathCards logo

SuperPathways for STAM-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for STAM-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for STAM-AS1 Gene

Drugs & Compounds for STAM-AS1 Gene

No Compound Related Data Available

Transcripts for STAM-AS1 Gene

mRNA/cDNA for STAM-AS1 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for STAM-AS1 Gene

No ASD Table

Relevant External Links for STAM-AS1 Gene

GeneLoc Exon Structure for
STAM-AS1

Expression for STAM-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for STAM-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for STAM-AS1

genes like me logo Genes that share expression patterns with STAM-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAM-AS1 Gene

Orthologs for STAM-AS1 Gene

Evolution for STAM-AS1 Gene

ENSEMBL:
Gene Tree for STAM-AS1 (if available)
TreeFam:
Gene Tree for STAM-AS1 (if available)

No data available for Orthologs for STAM-AS1 Gene

Paralogs for STAM-AS1 Gene

No data available for Paralogs for STAM-AS1 Gene

Variants for STAM-AS1 Gene

Additional dbSNP identifiers (rs#s) for STAM-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for STAM-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3622495 CNV loss 21293372

Additional Variant Information for STAM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for STAM-AS1 Gene

Disorders for STAM-AS1 Gene

Additional Disease Information for STAM-AS1

No disorders were found for STAM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAM-AS1 Gene

Publications for STAM-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for STAM-AS1 Gene

Sources for STAM-AS1 Gene