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Aliases for STAG3L5P Gene

Aliases for STAG3L5P Gene

  • Stromal Antigen 3-Like 5 Pseudogene 2 3 5

External Ids for STAG3L5P Gene

Previous GeneCards Identifiers for STAG3L5P Gene

  • GC07P099950

Summaries for STAG3L5P Gene

GeneCards Summary for STAG3L5P Gene

STAG3L5P (Stromal Antigen 3-Like 5 Pseudogene) is a Pseudogene.

Additional gene information for STAG3L5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L5P Gene

Genomics for STAG3L5P Gene

GeneHancer (GH) Regulatory Elements for STAG3L5P Gene

Promoters and enhancers for STAG3L5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I100335 Promoter/Enhancer 1.6 Ensembl ENCODE 561.2 +0.0 22 2.2 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B STAG3L5P STAG3L5P-PVRIG2P-PILRB PILRA ZSCAN25 ZNF3 ZNF655 TRIM4 GIGYF1 PCOLCE LOC100131859
GH07I100672 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 64 +340.9 340913 8.6 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 GNB2 GC07P100676 TRIM4 ZNF3 GIGYF1 SRRT PCOLCE STAG3L5P PPP1R35 ENSG00000242798
GH07I100475 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 59 +141.7 141676 4.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 TSC22D4 ZSCAN25 SRRT TRIM4 ZNF655 GIGYF1 ZNF3 ENSG00000242798 STAG3L5P PILRA
GH07I100704 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 54.8 +370.2 370161 2.9 CLOCK MLX DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC ZFP41 ZNF610 POP7 ZSCAN21 SRRT STAG3L5P GIGYF1 ENSG00000242798 ZNF3 AP4M1 TRIM4 PILRB
GH07I099579 Enhancer 1.3 FANTOM5 Ensembl ENCODE 81 -755.7 -755678 1.2 ZNF529 ZNF2 ZBTB40 RAD21 ZNF335 ZNF213 ZNF354C ZNF366 ZNF202 ZNF680 ZSCAN25 TRRAP TRIM4 LOC100131859 ZNF3 ZNF655 ENSG00000242798 STAG3L5P AP4M1 LOC101927550
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STAG3L5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for STAG3L5P Gene

Genomic Locations for STAG3L5P Gene
chr7:100,336,079-100,351,900
(GRCh38/hg38)
Size:
15,822 bases
Orientation:
Plus strand
chr7:99,933,702-99,949,523
(GRCh37/hg19)

Genomic View for STAG3L5P Gene

Genes around STAG3L5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L5P Gene

Proteins for STAG3L5P Gene

Post-translational modifications for STAG3L5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L5P Gene

Domains & Families for STAG3L5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for STAG3L5P Gene

Function for STAG3L5P Gene

Phenotypes From GWAS Catalog for STAG3L5P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L5P Gene

Localization for STAG3L5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAG3L5P Gene

Pathways & Interactions for STAG3L5P Gene

SuperPathways for STAG3L5P Gene

No Data Available

Interacting Proteins for STAG3L5P Gene

Gene Ontology (GO) - Biological Process for STAG3L5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L5P Gene

Drugs & Compounds for STAG3L5P Gene

No Compound Related Data Available

Transcripts for STAG3L5P Gene

mRNA/cDNA for STAG3L5P Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L5P Gene

No ASD Table

Relevant External Links for STAG3L5P Gene

GeneLoc Exon Structure for
STAG3L5P
ECgene alternative splicing isoforms for
STAG3L5P

Expression for STAG3L5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L5P Gene

NURSA nuclear receptor signaling pathways regulating expression of STAG3L5P Gene:

STAG3L5P
genes like me logo Genes that share expression patterns with STAG3L5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L5P Gene

Orthologs for STAG3L5P Gene

Evolution for STAG3L5P Gene

ENSEMBL:
Gene Tree for STAG3L5P (if available)
TreeFam:
Gene Tree for STAG3L5P (if available)

No data available for Orthologs for STAG3L5P Gene

Paralogs for STAG3L5P Gene

No data available for Paralogs for STAG3L5P Gene

Variants for STAG3L5P Gene

Sequence variations from dbSNP and Humsavar for STAG3L5P Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000380109 -- 100,336,841(+) C/A/T intron_variant
rs1001386657 -- 100,335,893(+) G/A upstream_transcript_variant
rs1001389225 -- 100,341,378(+) T/C downstream_transcript_variant
rs1001439847 -- 100,341,129(+) G/C non_coding_transcript_variant
rs1002444259 -- 100,339,706(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L5P Gene

Variant ID Type Subtype PubMed ID
nsv970561 CNV duplication 23825009
nsv831071 CNV loss 17160897
nsv8183 CNV gain+loss 18304495
nsv436898 CNV insertion 17901297
nsv428180 CNV gain 18775914
esv3614295 CNV gain 21293372
esv3614293 CNV gain 21293372
esv2734890 CNV deletion 23290073
esv2734888 CNV deletion 23290073
esv26986 CNV gain 19812545

Additional Variant Information for STAG3L5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L5P Gene

Disorders for STAG3L5P Gene

Additional Disease Information for STAG3L5P

No disorders were found for STAG3L5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L5P Gene

Publications for STAG3L5P Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes. (PMID: 16926269) Wilson MD … Koop BF (Physiological genomics 2006) 3 58
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for STAG3L5P Gene

Sources for STAG3L5P Gene

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