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Aliases for STAG3L4 Gene

Aliases for STAG3L4 Gene

  • Stromal Antigen 3-Like 4 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 4 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 4 2
  • STAG3-Like Protein 4 3
  • STAG3L4P 3

External Ids for STAG3L4 Gene

Previous GeneCards Identifiers for STAG3L4 Gene

  • GC07P066406
  • GC07P066767
  • GC07P062951

Summaries for STAG3L4 Gene

GeneCards Summary for STAG3L4 Gene

STAG3L4 (Stromal Antigen 3-Like 4 (Pseudogene)) is a Pseudogene.

Additional gene information for STAG3L4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L4 Gene

Genomics for STAG3L4 Gene

GeneHancer (GH) Regulatory Elements for STAG3L4 Gene

Promoters and enhancers for STAG3L4 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I067301 Promoter/Enhancer 1.6 Ensembl ENCODE 569.6 +0.1 52 2.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B ZNF766 STAG3L4 PMS2P4 TYW1 ENSG00000273448 RABGEF1 GS1-124K5.4
GH07I067127 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 16.4 -173.2 -173188 3.3 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF213 TYW1 RABGEF1 STAG3L4 LOC644794 MIR4650-1 GC07P067259
GH07I066993 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 -306.8 -306843 4.4 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 TYW1 SBDS ENSG00000229180 LOC100420547 ENSG00000244657 SPDYE21P TMEM248 RABGEF1 ENSG00000230189 STAG3L4
GH07I067102 Enhancer 1.1 Ensembl ENCODE dbSUPER 16 -197.9 -197906 3.5 HDAC1 MEIS2 PKNOX1 ARNT ETV1 TAL1 NCOR1 CBFA2T2 NFE2 SMARCE1 TYW1 STAG3L4 RABGEF1 MIR4650-1 ENSG00000233383
GH07I067333 Enhancer 0.6 dbSUPER 26.9 +36.6 36566 11.8 SMARCA5 BCOR ZMYM3 ZKSCAN1 ZNF184 HDAC2 ZFP36 NFE2 KDM1A SETDB1 STAG3L4 LINC01372 RABGEF1 PMS2P4 LOC105375337 ENSG00000273448
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STAG3L4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STAG3L4 gene promoter:

Genomic Locations for STAG3L4 Gene

Genomic Locations for STAG3L4 Gene
18,906 bases
Plus strand

Genomic View for STAG3L4 Gene

Genes around STAG3L4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L4 Gene

Proteins for STAG3L4 Gene

  • Protein details for STAG3L4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 4
    Protein Accession:
    Secondary Accessions:
    • Q9H8W0

    Protein attributes for STAG3L4 Gene

    150 amino acids
    Molecular mass:
    17020 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L4 Gene

Post-translational modifications for STAG3L4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for STAG3L4 Gene

Domains & Families for STAG3L4 Gene

Protein Domains for STAG3L4 Gene


Suggested Antigen Peptide Sequences for STAG3L4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SCC3 family.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L4: view

No data available for Gene Families for STAG3L4 Gene

Function for STAG3L4 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L4 Gene

Localization for STAG3L4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for STAG3L4 Gene

Pathways & Interactions for STAG3L4 Gene

SuperPathways for STAG3L4 Gene

No Data Available

Interacting Proteins for STAG3L4 Gene

Gene Ontology (GO) - Biological Process for STAG3L4 Gene


No data available for Pathways by source and SIGNOR curated interactions for STAG3L4 Gene

Drugs & Compounds for STAG3L4 Gene

No Compound Related Data Available

Transcripts for STAG3L4 Gene

mRNA/cDNA for STAG3L4 Gene

Unigene Clusters for STAG3L4 Gene

Stromal antigen 3-like 4:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L4 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b · 7c
SP1: - -
SP2: - - -
SP4: -
SP5: -
SP6: - - - - - -
SP7: - - - -
SP8: - - - -

Relevant External Links for STAG3L4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L4 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L4 Gene

Protein tissue co-expression partners for STAG3L4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STAG3L4 Gene:


SOURCE GeneReport for Unigene cluster for STAG3L4 Gene:

genes like me logo Genes that share expression patterns with STAG3L4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L4 Gene

Orthologs for STAG3L4 Gene

Evolution for STAG3L4 Gene

Gene Tree for STAG3L4 (if available)
Gene Tree for STAG3L4 (if available)

No data available for Orthologs for STAG3L4 Gene

Paralogs for STAG3L4 Gene

(9) SIMAP similar genes for STAG3L4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L4: view

No data available for Paralogs for STAG3L4 Gene

Variants for STAG3L4 Gene

Sequence variations from dbSNP and Humsavar for STAG3L4 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000237800 -- 67,317,370(+) T/C intron_variant
rs1000358985 -- 67,306,792(+) A/C intron_variant
rs1000537732 -- 67,316,331(+) C/T intron_variant
rs1000586562 -- 67,314,180(+) G/T intron_variant
rs1000707446 -- 67,305,376(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L4 Gene

Variant ID Type Subtype PubMed ID
dgv1919e212 CNV loss 25503493
dgv6447n100 CNV loss 25217958
esv2668831 CNV deletion 23128226
esv2759535 CNV gain 17122850
esv29559 CNV gain 19812545
esv3571899 CNV loss 25503493
esv3571904 CNV loss 25503493
esv3613545 CNV loss 21293372
esv3613546 CNV loss 21293372
esv3891136 CNV gain 25118596
nsv1032237 CNV loss 25217958
nsv1146102 OTHER inversion 26484159
nsv510086 OTHER sequence alteration 20534489
nsv970872 CNV duplication 23825009
nsv970873 CNV duplication 23825009

Additional Variant Information for STAG3L4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L4 Gene

Disorders for STAG3L4 Gene

Additional Disease Information for STAG3L4

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for STAG3L4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L4 Gene

Publications for STAG3L4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Genome-wide association study of age at menarche in African-American women. (PMID: 23599027) Demerath EW … Haiman CA (Human molecular genetics 2013) 3 58
  3. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PMID: 21130836) Luciano M … Deary IJ (Biological psychology 2011) 44 58
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  5. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 44 58

Products for STAG3L4 Gene

Sources for STAG3L4 Gene

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