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Aliases for STAG3L3 Gene

Aliases for STAG3L3 Gene

  • Stromal Antigen 3-Like 3 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 3 4
  • Stromal Antigen 3 Pseudogene 3
  • Stromal Antigen 3-Like 3 2
  • STAG3-Like Protein 3 3
  • STAG3L3P 3
  • STAG3L2 3
  • STAG3L1 3

External Ids for STAG3L3 Gene

Previous GeneCards Identifiers for STAG3L3 Gene

  • GC07M072109
  • GC07M072440
  • GC07M071801

Summaries for STAG3L3 Gene

GeneCards Summary for STAG3L3 Gene

STAG3L3 (Stromal Antigen 3-Like 3 (Pseudogene)) is a Pseudogene.

Additional gene information for STAG3L3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STAG3L3 Gene

Genomics for STAG3L3 Gene

GeneHancer (GH) Regulatory Elements for STAG3L3 Gene

Promoters and enhancers for STAG3L3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I073004 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 +0.0 42 2.2 HDAC1 ATF1 SIN3A ZNF335 POLR2B EGR2 SMARCA5 ZNF362 KLF16 NBN PMS2P7 STAG3L3
GH07I072827 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 50 +176.5 176537 4.4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 TYW1B PIR36920 SBDSP1 STAG3L3 POM121B TBL2 POM121 FKBP6 NSUN5P2 BUD23
GH07I073890 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 71.3 -884.5 -884458 0.8 ZBTB21 ZNF140 ZNF697 ZNF664 ZNF791 ZNF213 RBAK ZNF354C ZNF433 ZNF202 NSUN5P2 STAG3L3 BAZ1B GTF2IRD2 METTL27 POM121B MIR590 GTF2IRD2P1 LOC101926943 TBL2
GH07I073518 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 27.7 -515.1 -515077 4.5 HDGF PKNOX1 CLOCK SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 BAZ1B TBL2 POM121B STAG3L3 POM121 FKBP6 MIR590 BUD23 MLXIPL NSUN5P2
GH07I073667 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 27 -662.1 -662082 1.3 HDGF ARNT ARID4B SIN3A DMAP1 ZBTB7B E2F8 ZNF207 ZNF143 SP3 VPS37D STAG3L3 POM121B POM121 FKBP6 TBL2 BUD23 GTF2IRD2P1 NSUN5P2 MIR590
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around STAG3L3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STAG3L3 gene promoter:

Genomic Locations for STAG3L3 Gene

Genomic Locations for STAG3L3 Gene
chr7:72,969,696-73,005,943
(GRCh38/hg38)
Size:
36,248 bases
Orientation:
Minus strand
chr7:72,440,227-72,476,455
(GRCh37/hg19)

Genomic View for STAG3L3 Gene

Genes around STAG3L3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L3 Gene

Proteins for STAG3L3 Gene

  • Protein details for STAG3L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CL85-ST3L3_HUMAN
    Recommended name:
    STAG3-like protein 3
    Protein Accession:
    P0CL85
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L3 Gene

    Size:
    134 amino acids
    Molecular mass:
    15609 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for STAG3L3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for STAG3L3 Gene

Post-translational modifications for STAG3L3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L3 Gene

Domains & Families for STAG3L3 Gene

Protein Domains for STAG3L3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for STAG3L3 Gene

Graphical View of Domain Structure for InterPro Entry

P0CL85

UniProtKB/Swiss-Prot:

ST3L3_HUMAN :
  • Belongs to the SCC3 family.
Family:
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L3: view

No data available for Gene Families for STAG3L3 Gene

Function for STAG3L3 Gene

Phenotypes From GWAS Catalog for STAG3L3 Gene

Phenotypes for STAG3L3 Gene

GenomeRNAi human phenotypes for STAG3L3:
genes like me logo Genes that share phenotypes with STAG3L3: view

miRNA for STAG3L3 Gene

miRTarBase miRNAs that target STAG3L3

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STAG3L3 Gene

Localization for STAG3L3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STAG3L3 gene
Compartment Confidence
mitochondrion 3
nucleus 3
cytosol 1

Gene Ontology (GO) - Cellular Components for STAG3L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with STAG3L3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for STAG3L3 Gene

Pathways & Interactions for STAG3L3 Gene

SuperPathways for STAG3L3 Gene

No Data Available

Interacting Proteins for STAG3L3 Gene

Gene Ontology (GO) - Biological Process for STAG3L3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for STAG3L3 Gene

Drugs & Compounds for STAG3L3 Gene

No Compound Related Data Available

Transcripts for STAG3L3 Gene

mRNA/cDNA for STAG3L3 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L3 Gene

No ASD Table

Relevant External Links for STAG3L3 Gene

GeneLoc Exon Structure for
STAG3L3
ECgene alternative splicing isoforms for
STAG3L3

Expression for STAG3L3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L3 Gene

NURSA nuclear receptor signaling pathways regulating expression of STAG3L3 Gene:

STAG3L3
genes like me logo Genes that share expression patterns with STAG3L3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L3 Gene

Orthologs for STAG3L3 Gene

Evolution for STAG3L3 Gene

ENSEMBL:
Gene Tree for STAG3L3 (if available)
TreeFam:
Gene Tree for STAG3L3 (if available)

No data available for Orthologs for STAG3L3 Gene

Paralogs for STAG3L3 Gene

(5) SIMAP similar genes for STAG3L3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with STAG3L3: view

No data available for Paralogs for STAG3L3 Gene

Variants for STAG3L3 Gene

Sequence variations from dbSNP and Humsavar for STAG3L3 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs112397685 -- 72,999,947(-) T/C intron_variant
rs112985155 -- 72,997,107(-) A/T downstream_transcript_variant
rs113569099 -- 73,000,018(-) C/T intron_variant
rs137991935 -- 72,999,508(-) C/A non_coding_transcript_variant
rs142007583 -- 72,999,523(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L3 Gene

Variant ID Type Subtype PubMed ID
esv26856 CNV gain 19812545
esv2759537 CNV gain+loss 17122850
esv2764061 CNV gain+loss 21179565
esv34349 CNV gain 17911159
esv3613678 CNV loss 21293372
nsv1023115 CNV gain 25217958
nsv1029162 CNV loss 25217958
nsv1161563 CNV deletion 26073780
nsv428171 CNV gain 18775914
nsv469664 CNV loss 16826518
nsv520573 CNV gain+loss 19592680
nsv821246 CNV deletion 20802225
nsv831025 CNV loss 17160897
nsv950546 CNV deletion 24416366
nsv967332 CNV duplication 23825009
nsv970876 CNV duplication 23825009

Additional Variant Information for STAG3L3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STAG3L3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L3 Gene

Disorders for STAG3L3 Gene

Additional Disease Information for STAG3L3

No disorders were found for STAG3L3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L3 Gene

Publications for STAG3L3 Gene

  1. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for STAG3L3 Gene

Sources for STAG3L3 Gene

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