Aliases for STAG3L1 Gene

Aliases for STAG3L1 Gene

  • Stromal Antigen 3-Like 1 (Pseudogene) 2 3 5
  • Stromal Antigen 3-Like Protein 1 4
  • Putative STAG3-Like Protein 1 4
  • Stromal Antigen 3-Like 1 2
  • STAG3-Like Protein 1 3
  • STAG3L1P 3
  • STAG3L2 3
  • STAG3L3 3

External Ids for STAG3L1 Gene

Previous GeneCards Identifiers for STAG3L1 Gene

  • GC07P074827
  • GC07P074988
  • GC07P074321

Summaries for STAG3L1 Gene

GeneCards Summary for STAG3L1 Gene

STAG3L1 (Stromal Antigen 3-Like 1 (Pseudogene)) is a Pseudogene.

Additional gene information for STAG3L1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for STAG3L1 Gene

Genomics for STAG3L1 Gene

GeneHancer (GH) Regulatory Elements for STAG3L1 Gene

Promoters and enhancers for STAG3L1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around STAG3L1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STAG3L1 gene promoter:
  • C/EBPbeta
  • CBF(2)
  • CBF-A
  • CBF-B
  • CBF-C
  • CP1A
  • CP1C
  • Evi-1
  • FAC1
  • NF-Y

Genomic Locations for STAG3L1 Gene

Genomic Locations for STAG3L1 Gene
36,190 bases
Plus strand
36,211 bases
Plus strand

Genomic View for STAG3L1 Gene

Genes around STAG3L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STAG3L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STAG3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STAG3L1 Gene

Proteins for STAG3L1 Gene

  • Protein details for STAG3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative STAG3-like protein 1
    Protein Accession:
    Secondary Accessions:
    • A6NMT8
    • A8K0A1
    • Q32NE4
    • Q6NXR2
    • Q7L5M5
    • Q7Z5K6

    Protein attributes for STAG3L1 Gene

    205 amino acids
    Molecular mass:
    23775 Da
    Quaternary structure:
    No Data Available

neXtProt entry for STAG3L1 Gene

Post-translational modifications for STAG3L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for STAG3L1 Gene

Domains & Families for STAG3L1 Gene

Gene Families for STAG3L1 Gene

Protein Domains for STAG3L1 Gene


Suggested Antigen Peptide Sequences for STAG3L1 Gene

GenScript: Design optimal peptide antigens:
  • Stromal antigen 3-like protein 1 (ST3L1_HUMAN)

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SCC3 family.
  • Belongs to the SCC3 family.
genes like me logo Genes that share domains with STAG3L1: view

Function for STAG3L1 Gene

Phenotypes From GWAS Catalog for STAG3L1 Gene

Gene Ontology (GO) - Molecular Function for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003682 chromatin binding IBA 21873635
genes like me logo Genes that share ontologies with STAG3L1: view
genes like me logo Genes that share phenotypes with STAG3L1: view

Animal Model Products

CRISPR Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for STAG3L1 Gene

Localization for STAG3L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STAG3L1 Gene

Gene Ontology (GO) - Cellular Components for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000785 chromatin IBA 21873635
GO:0005634 nucleus IBA 21873635
GO:0008278 cohesin complex IBA 21873635
genes like me logo Genes that share ontologies with STAG3L1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for STAG3L1 Gene

Pathways & Interactions for STAG3L1 Gene

PathCards logo

SuperPathways for STAG3L1 Gene

No Data Available

Interacting Proteins for STAG3L1 Gene

Selected Interacting proteins: P0CL83-ST3L1_HUMAN for STAG3L1 Gene via IID

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for STAG3L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007062 sister chromatid cohesion IBA 21873635
genes like me logo Genes that share ontologies with STAG3L1: view

No data available for Pathways by source and SIGNOR curated interactions for STAG3L1 Gene

Drugs & Compounds for STAG3L1 Gene

No Compound Related Data Available

Transcripts for STAG3L1 Gene

mRNA/cDNA for STAG3L1 Gene

(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STAG3L1 Gene

No ASD Table

Relevant External Links for STAG3L1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for STAG3L1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STAG3L1 Gene

Protein differential expression in normal tissues from HIPED for STAG3L1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for STAG3L1 Gene

Protein tissue co-expression partners for STAG3L1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STAG3L1 Gene:


SOURCE GeneReport for Unigene cluster for STAG3L1 Gene:

genes like me logo Genes that share expression patterns with STAG3L1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for STAG3L1 Gene

Orthologs for STAG3L1 Gene

Evolution for STAG3L1 Gene

Gene Tree for STAG3L1 (if available)
Gene Tree for STAG3L1 (if available)

No data available for Orthologs for STAG3L1 Gene

Paralogs for STAG3L1 Gene

(11) SIMAP similar genes for STAG3L1 Gene using alignment to 2 proteins:

  • Q7L1H2_HUMAN
genes like me logo Genes that share paralogs with STAG3L1: view

No data available for Paralogs for STAG3L1 Gene

Variants for STAG3L1 Gene

Sequence variations from dbSNP and Humsavar for STAG3L1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs111764150 -- 75,366,640(+) A/T intron_variant
rs113221595 -- 75,357,596(+) C/A upstream_transcript_variant
rs1156237544 -- 75,358,904(+) A/C upstream_transcript_variant
rs1156463582 -- 75,359,871(+) G/C intron_variant
rs1156612581 -- 75,360,897(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for STAG3L1 Gene

Variant ID Type Subtype PubMed ID
nsv528969 CNV gain 19592680
nsv831035 CNV loss 17160897
nsv967341 CNV duplication 23825009
nsv981534 CNV duplication 23825009

Additional Variant Information for STAG3L1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for STAG3L1 Gene

Disorders for STAG3L1 Gene

Additional Disease Information for STAG3L1

No disorders were found for STAG3L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STAG3L1 Gene

Publications for STAG3L1 Gene

  1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3 56
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 56
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3 56
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  5. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 56

Products for STAG3L1 Gene

Sources for STAG3L1 Gene