Aliases for ST8SIA6-AS1 Gene

Subcategory (RNA class) for ST8SIA6-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ST8SIA6-AS1 Gene

  • ST8SIA6 Antisense RNA 1 2 3 5
  • Aurora A/PLK1 Associated LncRNA 2 3
  • ST8SIA6-AS1 2 168
  • HSALNG0076446 167
  • NONHSAG005325 92
  • HSALNG0076448 167
  • APAL 3

External Ids for ST8SIA6-AS1 Gene

Previous GeneCards Identifiers for ST8SIA6-AS1 Gene

  • GC10P017430

Summaries for ST8SIA6-AS1 Gene

GeneCards Summary for ST8SIA6-AS1 Gene

ST8SIA6-AS1 (ST8SIA6 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ST8SIA6-AS1 include Breast Cancer.

Additional gene information for ST8SIA6-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ST8SIA6-AS1 Gene

Genomics for ST8SIA6-AS1 Gene

GeneHancer (GH) Regulatory Elements for ST8SIA6-AS1 Gene

Promoters and enhancers for ST8SIA6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J017386 Enhancer 1 Ensembl ENCODE 507 +1.0 1037 3.3 ZNF217 CUX1 CHD1 TAF9B GATAD2B CTBP1 HCFC1 HES1 NFRKB MYC ST8SIA6-AS1 piR-57460-043 ST8SIA6 ENSG00000251803
GH10J017385 Enhancer 0.3 ENCODE 500.7 -1.4 -1418 1.2 PRDM10 ZNF133 ST8SIA6-AS1 piR-57460-043 ST8SIA6 piR-60146-014
GH10J017347 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 11 -37.8 -37843 2.2 ZNF217 NRF1 JUND CUX1 MYC CTBP1 GATAD2B MXI1 OSR2 ZNF316 ST8SIA6-AS1 ST8SIA6 piR-60146-014
GH10J017420 Enhancer 0.6 Ensembl dbSUPER 23.9 +34.0 33982 1 ZBTB33 CHAMP1 ZNF316 ST8SIA6-AS1 ST8SIA6 HACD1 lnc-VIM-2 ENSG00000251803
GH10J017423 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 8.9 +39.8 39789 6.2 BCLAF1 PHB2 ZBTB5 ZIC2 ZBTB11 AFF1 TARDBP REST DNMT1 HES1 lnc-VIM-2 ST8SIA6 TMEM236 ST8SIA6-AS1 STAM TRDMT1 ENSG00000251803
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ST8SIA6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ST8SIA6-AS1 Gene

Genomic Locations for ST8SIA6-AS1 Gene
chr10:17,386,919-17,453,225
(GRCh38/hg38)
Size:
66,307 bases
Orientation:
Plus strand
chr10:17,428,935-17,455,502
(GRCh37/hg19)
Size:
26,568 bases
Orientation:
Plus strand

Genomic View for ST8SIA6-AS1 Gene

Genes around ST8SIA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST8SIA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST8SIA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST8SIA6-AS1 Gene

Proteins for ST8SIA6-AS1 Gene

Post-translational modifications for ST8SIA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST8SIA6-AS1 Gene

Domains & Families for ST8SIA6-AS1 Gene

Gene Families for ST8SIA6-AS1 Gene

genes like me logo Genes that share domains with ST8SIA6-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ST8SIA6-AS1 Gene

Function for ST8SIA6-AS1 Gene

Phenotypes From GWAS Catalog for ST8SIA6-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST8SIA6-AS1 Gene

Localization for ST8SIA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ST8SIA6-AS1 Gene

Pathways & Interactions for ST8SIA6-AS1 Gene

PathCards logo

SuperPathways for ST8SIA6-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ST8SIA6-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ST8SIA6-AS1 Gene

Drugs & Compounds for ST8SIA6-AS1 Gene

No Compound Related Data Available

Transcripts for ST8SIA6-AS1 Gene

mRNA/cDNA for ST8SIA6-AS1 Gene

12 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
8 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ST8SIA6-AS1 Gene

No ASD Table

Relevant External Links for ST8SIA6-AS1 Gene

GeneLoc Exon Structure for
ST8SIA6-AS1

Expression for ST8SIA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ST8SIA6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ST8SIA6-AS1 Gene

This gene is overexpressed in Testis (x21.6), Prostate (x6.6), and Nerve - Tibial (x5.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ST8SIA6-AS1

SOURCE GeneReport for Unigene cluster for ST8SIA6-AS1 Gene:

Hs.530588
genes like me logo Genes that share expression patterns with ST8SIA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST8SIA6-AS1 Gene

Orthologs for ST8SIA6-AS1 Gene

Evolution for ST8SIA6-AS1 Gene

ENSEMBL:
Gene Tree for ST8SIA6-AS1 (if available)
TreeFam:
Gene Tree for ST8SIA6-AS1 (if available)

No data available for Orthologs for ST8SIA6-AS1 Gene

Paralogs for ST8SIA6-AS1 Gene

No data available for Paralogs for ST8SIA6-AS1 Gene

Variants for ST8SIA6-AS1 Gene

Additional dbSNP identifiers (rs#s) for ST8SIA6-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ST8SIA6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3578664 CNV loss 25503493
esv3891766 CNV loss 25118596
nsv1039697 CNV loss 25217958

Additional Variant Information for ST8SIA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST8SIA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ST8SIA6-AS1 Gene

Disorders for ST8SIA6-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ST8SIA6-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ST8SIA6-AS1

genes like me logo Genes that share disorders with ST8SIA6-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ST8SIA6-AS1 Gene

Publications for ST8SIA6-AS1 Gene

  1. The Role of APAL/ST8SIA6-AS1 lncRNA in PLK1 Activation and Mitotic Catastrophe of Tumor Cells. (PMID: 31286138) Luo ML … Song E (Journal of the National Cancer Institute 2019) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for ST8SIA6-AS1 Gene

Sources for ST8SIA6-AS1 Gene