Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ST8SIA6-AS1 Gene

Subcategory (RNA class) for ST8SIA6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ST8SIA6-AS1 Gene

  • ST8SIA6 Antisense RNA 1 2 3 5

External Ids for ST8SIA6-AS1 Gene

Previous GeneCards Identifiers for ST8SIA6-AS1 Gene

  • GC10P017430

Summaries for ST8SIA6-AS1 Gene

GeneCards Summary for ST8SIA6-AS1 Gene

ST8SIA6-AS1 (ST8SIA6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ST8SIA6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ST8SIA6-AS1 Gene

Genomics for ST8SIA6-AS1 Gene

GeneHancer (GH) Regulatory Elements for ST8SIA6-AS1 Gene

Promoters and enhancers for ST8SIA6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I017386 Enhancer 0.9 ENCODE 557.1 +0.7 732 2.7 HDAC1 CLOCK ATF1 FOXA2 TAF9B NFIB NFRKB NEUROD1 BMI1 ZNF207 ST8SIA6-AS1 LOC105376438 ST8SIA6 GC10P017403
GH10I017385 Enhancer 0.4 ENCODE 550.8 -1.4 -1435 1.2 ZNF133 PRDM10 ST8SIA6-AS1 ST8SIA6 GC10P017237
GH10I017423 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 8.9 +39.8 39772 6.2 HDGF PKNOX1 SMAD1 ARNT YBX1 POLR2B ZNF766 E2F8 ZNF592 MEF2D LOC105376438 ST8SIA6 TMEM236 ST8SIA6-AS1 STAM TRDMT1 LOC105376436 ENSG00000251803
GH10I017347 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11 -37.9 -37860 2.2 HDAC1 NFIB ZSCAN4 ZNF335 TCF12 SCRT2 FOS ATF7 RCOR1 PHF21A ST8SIA6-AS1 ST8SIA6 GC10P017237
GH10I017413 Enhancer 0.6 dbSUPER 18.6 +27.9 27919 1.9 MEIS2 PKNOX1 L3MBTL2 TEAD4 CBFA2T3 DPF2 ZNF592 NCOA2 ZNF316 ZNF184 ST8SIA6-AS1 ENSG00000251803 LOC105376436 ST8SIA6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ST8SIA6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ST8SIA6-AS1 Gene

Genomic Locations for ST8SIA6-AS1 Gene
chr10:17,386,936-17,413,503
(GRCh38/hg38)
Size:
26,568 bases
Orientation:
Plus strand
chr10:17,428,935-17,455,502
(GRCh37/hg19)

Genomic View for ST8SIA6-AS1 Gene

Genes around ST8SIA6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ST8SIA6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ST8SIA6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ST8SIA6-AS1 Gene

Proteins for ST8SIA6-AS1 Gene

Post-translational modifications for ST8SIA6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ST8SIA6-AS1 Gene

Domains & Families for ST8SIA6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ST8SIA6-AS1 Gene

Function for ST8SIA6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ST8SIA6-AS1 Gene

Localization for ST8SIA6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ST8SIA6-AS1 Gene

Pathways & Interactions for ST8SIA6-AS1 Gene

SuperPathways for ST8SIA6-AS1 Gene

No Data Available

Interacting Proteins for ST8SIA6-AS1 Gene

Gene Ontology (GO) - Biological Process for ST8SIA6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ST8SIA6-AS1 Gene

Drugs & Compounds for ST8SIA6-AS1 Gene

No Compound Related Data Available

Transcripts for ST8SIA6-AS1 Gene

mRNA/cDNA for ST8SIA6-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ST8SIA6-AS1 Gene

ST8SIA6 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ST8SIA6-AS1 Gene

No ASD Table

Relevant External Links for ST8SIA6-AS1 Gene

GeneLoc Exon Structure for
ST8SIA6-AS1
ECgene alternative splicing isoforms for
ST8SIA6-AS1

Expression for ST8SIA6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ST8SIA6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ST8SIA6-AS1 Gene

This gene is overexpressed in Testis (x21.6), Prostate (x6.6), and Nerve - Tibial (x5.6).

SOURCE GeneReport for Unigene cluster for ST8SIA6-AS1 Gene:

Hs.530588
genes like me logo Genes that share expression patterns with ST8SIA6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ST8SIA6-AS1 Gene

Orthologs for ST8SIA6-AS1 Gene

Evolution for ST8SIA6-AS1 Gene

ENSEMBL:
Gene Tree for ST8SIA6-AS1 (if available)
TreeFam:
Gene Tree for ST8SIA6-AS1 (if available)

No data available for Orthologs for ST8SIA6-AS1 Gene

Paralogs for ST8SIA6-AS1 Gene

No data available for Paralogs for ST8SIA6-AS1 Gene

Variants for ST8SIA6-AS1 Gene

Sequence variations from dbSNP and Humsavar for ST8SIA6-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000091975 -- 17,389,854(+) G/A intron_variant
rs1000435581 -- 17,408,768(+) T/A downstream_transcript_variant
rs1000572631 -- 17,403,146(+) A/G intron_variant
rs1000791614 -- 17,390,190(+) T/C intron_variant
rs1000793124 -- 17,405,942(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ST8SIA6-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1039697 CNV loss 25217958
esv3891766 CNV loss 25118596
esv3578664 CNV loss 25503493

Additional Variant Information for ST8SIA6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ST8SIA6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ST8SIA6-AS1 Gene

Disorders for ST8SIA6-AS1 Gene

Additional Disease Information for ST8SIA6-AS1

No disorders were found for ST8SIA6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ST8SIA6-AS1 Gene

Publications for ST8SIA6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ST8SIA6-AS1 Gene

Sources for ST8SIA6-AS1 Gene

Content
Loading form....