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Aliases for SSXP10 Gene

Aliases for SSXP10 Gene

  • SSX Family Pseudogene 10 2 3 5
  • SSX10 Pseudogene 3
  • PsiSSX10 3

External Ids for SSXP10 Gene

Previous GeneCards Identifiers for SSXP10 Gene

  • GC06M119017
  • GC06M118909
  • GC06P118912
  • GC06P116491

Summaries for SSXP10 Gene

GeneCards Summary for SSXP10 Gene

SSXP10 (SSX Family Pseudogene 10) is a Pseudogene.

Additional gene information for SSXP10 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSXP10 Gene

Genomics for SSXP10 Gene

GeneHancer (GH) Regulatory Elements for SSXP10 Gene

Promoters and enhancers for SSXP10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I118649 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 14.7 +61.8 61805 3.4 PKNOX1 ATF1 ARID4B SIN3A GLI4 ZNF48 SLC30A9 ZNF121 GLIS2 ATF7 CEP85L SSXP10 MCM9
GH06I118536 Enhancer 1.5 VISTA FANTOM5 dbSUPER 16.7 -51.7 -51724 2.6 HDAC1 PKNOX1 ATF1 CHAMP1 NCOA2 TCF12 ZNF766 ATF7 CREM ZEB2 PLN SSXP10 BRD7P3 CEP85L
GH06I118659 Enhancer 1.3 Ensembl ENCODE dbSUPER 14.9 +71.2 71166 1.3 HDGF PKNOX1 SMAD1 NFIB ZNF529 MZF1 ZNF195 FEZF1 NCOA2 ZNF335 ASF1A SSXP10 MCM9 NUS1 CEP85L
GH06I118580 Enhancer 1 Ensembl ENCODE 16.9 -7.2 -7182 2.5 HDAC1 ZNF2 ZNF48 RAD21 CHAMP1 ZNF766 FOS ATF7 ZNF654 ZNF362 SSXP10 PLN CEP85L
GH06I118551 Enhancer 1.1 Ensembl ENCODE dbSUPER 14.9 -37.5 -37463 1.2 CTCF MAX ZNF384 CEBPG RAD21 CC2D1A EGR1 ARID2 ZNF143 SMC3 SSXP10 PLN CEP85L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SSXP10 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SSXP10 Gene

Genomic Locations for SSXP10 Gene
chr6:118,589,052-118,590,241
(GRCh38/hg38)
Size:
1,190 bases
Orientation:
Plus strand
chr6:118,910,216-118,911,338
(GRCh37/hg19)

Genomic View for SSXP10 Gene

Genes around SSXP10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSXP10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSXP10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSXP10 Gene

Proteins for SSXP10 Gene

Post-translational modifications for SSXP10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSXP10 Gene

Domains & Families for SSXP10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SSXP10 Gene

Function for SSXP10 Gene

Phenotypes From GWAS Catalog for SSXP10 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSXP10 Gene

Localization for SSXP10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SSXP10 Gene

Pathways & Interactions for SSXP10 Gene

SuperPathways for SSXP10 Gene

No Data Available

Interacting Proteins for SSXP10 Gene

Gene Ontology (GO) - Biological Process for SSXP10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SSXP10 Gene

Drugs & Compounds for SSXP10 Gene

No Compound Related Data Available

Transcripts for SSXP10 Gene

mRNA/cDNA for SSXP10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SSXP10 Gene

No ASD Table

Relevant External Links for SSXP10 Gene

GeneLoc Exon Structure for
SSXP10
ECgene alternative splicing isoforms for
SSXP10

Expression for SSXP10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSXP10 Gene

mRNA differential expression in normal tissues according to GTEx for SSXP10 Gene

This gene is overexpressed in Fallopian Tube (x11.4), Artery - Aorta (x6.6), Artery - Tibial (x5.0), and Muscle - Skeletal (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of SSXP10 Gene:

SSXP10
genes like me logo Genes that share expression patterns with SSXP10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSXP10 Gene

Orthologs for SSXP10 Gene

Evolution for SSXP10 Gene

ENSEMBL:
Gene Tree for SSXP10 (if available)
TreeFam:
Gene Tree for SSXP10 (if available)

No data available for Orthologs for SSXP10 Gene

Paralogs for SSXP10 Gene

No data available for Paralogs for SSXP10 Gene

Variants for SSXP10 Gene

Additional Variant Information for SSXP10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSXP10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SSXP10 Gene

Disorders for SSXP10 Gene

Additional Disease Information for SSXP10

Genetic Association Database
(GAD)

No disorders were found for SSXP10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSXP10 Gene

Publications for SSXP10 Gene

  1. The SSX gene family: characterization of 9 complete genes. (PMID: 12216073) Güre AO … Chen YT (International journal of cancer 2002) 2 3 58
  2. Common variants at ten loci influence QT interval duration in the QTGEN Study. (PMID: 19305408) Newton-Cheh C … Stricker BH (Nature genetics 2009) 44 58

Products for SSXP10 Gene

Sources for SSXP10 Gene

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