The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. SSX1, SSX2 and SSX4 genes ... See more...

Aliases for SSX9P Gene

Aliases for SSX9P Gene

  • SSX Family Member 9, Pseudogene 2 3 5
  • Synovial Sarcoma, X Breakpoint 9 2 3
  • SSX9 3 4
  • Synovial Sarcoma, X Breakpoint 7, Pseudogene 3
  • Epididymis Secretory Sperm Binding Protein 3
  • Putative Protein SSX9 4
  • SSX Family Member 9 2
  • SSX9P 5

External Ids for SSX9P Gene

Previous HGNC Symbols for SSX9P Gene

  • SSX9

Summaries for SSX9P Gene

Entrez Gene Summary for SSX9P Gene

  • The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. SSX1, SSX2 and SSX4 genes have been involved in the t(X;18) translocation characteristically found in all synovial sarcomas. This gene appears not to be involved in this type of chromosome translocation. [provided by RefSeq, Jul 2008]

GeneCards Summary for SSX9P Gene

SSX9P (SSX Family Member 9, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot Summary for SSX9P Gene

Additional gene information for SSX9P Gene

No data available for CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SSX9P Gene

Genomics for SSX9P Gene

Genomic Locations for SSX9P Gene

Genomic Locations for SSX9P Gene
chrX:48,296,816-48,306,179
(GRCh38/hg38)
Size:
9,364 bases
Orientation:
Minus strand
chrX:48,154,885-48,165,732
(GRCh37/hg19)
Size:
10,848 bases
Orientation:
Minus strand

Genomic View for SSX9P Gene

Genes around SSX9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSX9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSX9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSX9P Gene

No data available for GeneHancer (GH) Regulatory Elements for SSX9P Gene

Proteins for SSX9P Gene

  • Protein details for SSX9P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTT3-SSX9_HUMAN
    Recommended name:
    Putative protein SSX9
    Protein Accession:
    Q7RTT3

    Protein attributes for SSX9P Gene

    Size:
    188 amino acids
    Molecular mass:
    21553 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSX9P Gene

Post-translational modifications for SSX9P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SSX9P Gene

Domains & Families for SSX9P Gene

Gene Families for SSX9P Gene

HGNC:

Protein Domains for SSX9P Gene

InterPro:
Blocks:
  • KRAB box
ProtoNet:

Suggested Antigen Peptide Sequences for SSX9P Gene

GenScript: Design optimal peptide antigens:
  • Protein SSX9 (SSX9_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q7RTT3

UniProtKB/Swiss-Prot:

SSX9_HUMAN :
  • Belongs to the SSX family.
Family:
  • Belongs to the SSX family.
genes like me logo Genes that share domains with SSX9P: view

Function for SSX9P Gene

Molecular function for SSX9P Gene

UniProtKB/Swiss-Prot Function:
Could act as a modulator of transcription.

Gene Ontology (GO) - Molecular Function for SSX9P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with SSX9P: view

Phenotypes for SSX9P Gene

genes like me logo Genes that share phenotypes with SSX9P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSX9P

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSX9P Gene

Localization for SSX9P Gene

Gene Ontology (GO) - Cellular Components for SSX9P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA 21873635
genes like me logo Genes that share ontologies with SSX9P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SSX9P Gene

Pathways & Interactions for SSX9P Gene

PathCards logo

SuperPathways for SSX9P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SSX9P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with SSX9P: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SSX9P Gene

Drugs & Compounds for SSX9P Gene

No Compound Related Data Available

Transcripts for SSX9P Gene

mRNA/cDNA for SSX9P Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSX9P

Alternative Splicing Database (ASD) splice patterns (SP) for SSX9P Gene

No ASD Table

Relevant External Links for SSX9P Gene

GeneLoc Exon Structure for
SSX9P

Expression for SSX9P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SSX9P

mRNA Expression by UniProt/SwissProt for SSX9P Gene:

Q7RTT3-SSX9_HUMAN
Tissue specificity: Not detected in any normal or tumor tissues.

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSX9P Gene

Orthologs for SSX9P Gene

Evolution for SSX9P Gene

ENSEMBL:
Gene Tree for SSX9P (if available)
TreeFam:
Gene Tree for SSX9P (if available)

No data available for Orthologs for SSX9P Gene

Paralogs for SSX9P Gene

No data available for Paralogs for SSX9P Gene

Variants for SSX9P Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SSX9P Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
rs4598385 - p.Cys72Arg
rs6609702 - p.Ser97Pro

Structural Variations from Database of Genomic Variants (DGV) for SSX9P Gene

Variant ID Type Subtype PubMed ID
esv25781 CNV gain 19812545
esv2671998 CNV deletion 23128226
esv2740147 CNV deletion 23290073
esv2752324 CNV gain 17911159
esv32909 CNV gain+loss 17666407
esv3573943 CNV loss 25503493
nsv523595 CNV gain 19592680

Additional Variant Information for SSX9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSX9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Additional dbSNP identifiers (rs#s) and Variation tolerance for SSX9P Gene

Disorders for SSX9P Gene

Additional Disease Information for SSX9P

No disorders were found for SSX9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSX9P Gene

Publications for SSX9P Gene

  1. The SSX gene family: characterization of 9 complete genes. (PMID: 12216073) Güre AO … Chen YT (International journal of cancer 2002) 2 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SSX9P Gene

Sources for SSX9P Gene