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Aliases for SSX9 Gene

Aliases for SSX9 Gene

  • SSX Family Member 9, Pseudogene 2 3 5
  • Synovial Sarcoma, X Breakpoint 9 2 3
  • Synovial Sarcoma, X Breakpoint 7, Pseudogene 3
  • SSX Family Member 9 2
  • SSX9P 3

External Ids for SSX9 Gene

Previous GeneCards Identifiers for SSX9 Gene

  • GC0XU900003
  • GC0XM046981
  • GC0XM047201
  • GC0XM047202
  • GC0XM047911
  • GC0XM048039
  • GC0XM048154

Summaries for SSX9 Gene

Entrez Gene Summary for SSX9 Gene

  • The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. SSX1, SSX2 and SSX4 genes have been involved in the t(X;18) translocation characteristically found in all synovial sarcomas. This gene appears not to be involved in this type of chromosome translocation. [provided by RefSeq, Jul 2008]

GeneCards Summary for SSX9 Gene

SSX9 (SSX Family Member 9, Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding.

UniProtKB/Swiss-Prot for SSX9 Gene

  • Could act as a modulator of transcription.

Additional gene information for SSX9 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SSX9 Gene

Genomics for SSX9 Gene

GeneHancer (GH) Regulatory Elements for SSX9 Gene

Top Transcription factor binding sites by QIAGEN in the SSX9 gene promoter:

Genomic Locations for SSX9 Gene

Genomic Locations for SSX9 Gene
9,364 bases
Minus strand

Genomic View for SSX9 Gene

Genes around SSX9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSX9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSX9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSX9 Gene

Proteins for SSX9 Gene

  • Protein details for SSX9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein SSX9
    Protein Accession:

    Protein attributes for SSX9 Gene

    188 amino acids
    Molecular mass:
    21553 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SSX9 Gene

Post-translational modifications for SSX9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSX9 Gene

Domains & Families for SSX9 Gene

Protein Domains for SSX9 Gene

Suggested Antigen Peptide Sequences for SSX9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SSX family.
  • Belongs to the SSX family.
genes like me logo Genes that share domains with SSX9: view

No data available for Gene Families for SSX9 Gene

Function for SSX9 Gene

Molecular function for SSX9 Gene

UniProtKB/Swiss-Prot Function:
Could act as a modulator of transcription.

Gene Ontology (GO) - Molecular Function for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003714 transcription corepressor activity IBA --
genes like me logo Genes that share ontologies with SSX9: view

Phenotypes for SSX9 Gene

GenomeRNAi human phenotypes for SSX9:
genes like me logo Genes that share phenotypes with SSX9: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSX9 Gene

Localization for SSX9 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SSX9 gene
Compartment Confidence
nucleus 4
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with SSX9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SSX9 Gene

Pathways & Interactions for SSX9 Gene

No Data Available

Interacting Proteins for SSX9 Gene

Gene Ontology (GO) - Biological Process for SSX9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:1903507 negative regulation of nucleic acid-templated transcription IBA --
genes like me logo Genes that share ontologies with SSX9: view

No data available for Pathways by source and SIGNOR curated interactions for SSX9 Gene

Drugs & Compounds for SSX9 Gene

No Compound Related Data Available

Transcripts for SSX9 Gene

mRNA/cDNA for SSX9 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SSX9 Gene

No ASD Table

Relevant External Links for SSX9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SSX9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SSX9 Gene

mRNA differential expression in normal tissues according to GTEx for SSX9 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of SSX9 Gene:


mRNA Expression by UniProt/SwissProt for SSX9 Gene:

Tissue specificity: Not detected in any normal or tumor tissues.
genes like me logo Genes that share expression patterns with SSX9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSX9 Gene

Orthologs for SSX9 Gene

Evolution for SSX9 Gene

Gene Tree for SSX9 (if available)
Gene Tree for SSX9 (if available)

No data available for Orthologs for SSX9 Gene

Paralogs for SSX9 Gene

(17) SIMAP similar genes for SSX9 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SSX9: view

No data available for Paralogs for SSX9 Gene

Variants for SSX9 Gene

Sequence variations from dbSNP and Humsavar for SSX9 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs111877810 -- 48,304,021(-) A/G intron_variant
rs111957618 -- 48,305,629(-) C/ intron_variant
rs112410387 -- 48,301,420(-) T/G downstream_transcript_variant
rs112513685 -- 48,304,125(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SSX9 Gene

Variant ID Type Subtype PubMed ID
nsv523595 CNV gain 19592680
esv3573943 CNV loss 25503493
esv32909 CNV gain+loss 17666407
esv2752324 CNV gain 17911159
esv2740147 CNV deletion 23290073
esv2671998 CNV deletion 23128226
esv25781 CNV gain 19812545

Additional Variant Information for SSX9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SSX9 Gene

Disorders for SSX9 Gene

Additional Disease Information for SSX9

No disorders were found for SSX9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSX9 Gene

Publications for SSX9 Gene

  1. The SSX gene family: characterization of 9 complete genes. (PMID: 12216073) Güre AO … Chen YT (International journal of cancer 2002) 2 3 4 58
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SSX9 Gene

Sources for SSX9 Gene

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