Aliases for SSX8P Gene

Aliases for SSX8P Gene

  • SSX Family Member 8, Pseudogene 2 3 5
  • Synovial Sarcoma, X Breakpoint 8 2 3
  • SSX Family Member 8 2 3
  • SSX8 3 4
  • Putative Protein SSX8 4
  • SSX8P 5

External Ids for SSX8P Gene

Previous HGNC Symbols for SSX8P Gene

  • SSX8

Previous GeneCards Identifiers for SSX8P Gene

  • GC0XP052623

Summaries for SSX8P Gene

GeneCards Summary for SSX8P Gene

SSX8P (SSX Family Member 8, Pseudogene) is a Pseudogene.

UniProtKB/Swiss-Prot Summary for SSX8P Gene

Additional gene information for SSX8P Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SSX8P Gene

Genomics for SSX8P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SSX8P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ053047 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 4.4 +427.0 426965 5 CTCF PRDM10 RFX1 ZSCAN4 POLR2A NR2C1 ZBTB20 SP2 JUND KLF7 GPR173 TSPYL2 SSX8P lnc-FAM156A-4 ENSG00000270497 RF00017-8444 MN297907-035
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SSX8P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SSX8P Gene

Genomic Locations for SSX8P Gene
chrX:52,622,935-52,633,948
(GRCh38/hg38)
Size:
11,014 bases
Orientation:
Plus strand
chrX:52,651,985-52,662,998
(GRCh37/hg19)
Size:
11,014 bases
Orientation:
Plus strand

Genomic View for SSX8P Gene

Genes around SSX8P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SSX8P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SSX8P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SSX8P Gene

Proteins for SSX8P Gene

  • Protein details for SSX8P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTT4-SSX8_HUMAN
    Recommended name:
    Putative protein SSX8
    Protein Accession:
    Q7RTT4
    Secondary Accessions:
    • A6NJM6

    Protein attributes for SSX8P Gene

    Size:
    187 amino acids
    Molecular mass:
    21859 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=DAA00375.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for SSX8P Gene

Post-translational modifications for SSX8P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SSX8P Gene

Domains & Families for SSX8P Gene

Gene Families for SSX8P Gene

HGNC:

Protein Domains for SSX8P Gene

InterPro:
Blocks:
  • KRAB box
ProtoNet:

Suggested Antigen Peptide Sequences for SSX8P Gene

GenScript: Design optimal peptide antigens:
  • Protein SSX8 (SSX8_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q7RTT4

UniProtKB/Swiss-Prot:

SSX8_HUMAN :
  • Belongs to the SSX family.
Family:
  • Belongs to the SSX family.
genes like me logo Genes that share domains with SSX8P: view

Function for SSX8P Gene

Molecular function for SSX8P Gene

UniProtKB/Swiss-Prot Function:
Could act as a modulator of transcription.

Gene Ontology (GO) - Molecular Function for SSX8P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with SSX8P: view
genes like me logo Genes that share phenotypes with SSX8P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSX8P

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SSX8P Gene

Localization for SSX8P Gene

Gene Ontology (GO) - Cellular Components for SSX8P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA 21873635
genes like me logo Genes that share ontologies with SSX8P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SSX8P Gene

Pathways & Interactions for SSX8P Gene

PathCards logo

SuperPathways for SSX8P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SSX8P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with SSX8P: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SSX8P Gene

Drugs & Compounds for SSX8P Gene

No Compound Related Data Available

Transcripts for SSX8P Gene

mRNA/cDNA for SSX8P Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SSX8P

Alternative Splicing Database (ASD) splice patterns (SP) for SSX8P Gene

No ASD Table

Relevant External Links for SSX8P Gene

GeneLoc Exon Structure for
SSX8P

Expression for SSX8P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SSX8P

SOURCE GeneReport for Unigene cluster for SSX8P Gene:

Hs.694472

mRNA Expression by UniProt/SwissProt for SSX8P Gene:

Q7RTT4-SSX8_HUMAN
Tissue specificity: Not detected in any normal or tumor tissues.

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SSX8P Gene

Orthologs for SSX8P Gene

Evolution for SSX8P Gene

ENSEMBL:
Gene Tree for SSX8P (if available)
TreeFam:
Gene Tree for SSX8P (if available)

No data available for Orthologs for SSX8P Gene

Paralogs for SSX8P Gene

No data available for Paralogs for SSX8P Gene

Variants for SSX8P Gene

Structural Variations from Database of Genomic Variants (DGV) for SSX8P Gene

Variant ID Type Subtype PubMed ID
esv21492 CNV gain 19812545
esv2740170 CNV deletion 23290073

Additional Variant Information for SSX8P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SSX8P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SSX8P Gene

Disorders for SSX8P Gene

Additional Disease Information for SSX8P

No disorders were found for SSX8P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SSX8P Gene

Publications for SSX8P Gene

  1. The SSX gene family: characterization of 9 complete genes. (PMID: 12216073) Güre AO … Chen YT (International journal of cancer 2002) 2 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3

Products for SSX8P Gene

Sources for SSX8P Gene